BtaEX0041551 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047219 | ZNF793
Description
zinc finger protein 793 [Source:HGNC Symbol;Acc:HGNC:33115]
Coordinates
chr18:47435161-47447414:-
Coord C1 exon
chr18:47447369-47447414
Coord A exon
chr18:47436510-47436639
Coord C2 exon
chr18:47435161-47435256
Length
130 bp
Sequences
Splice sites
3' ss Seq
CAGTGTCATTTCATCTTCAGCAG
3' ss Score
5.38
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GCTGCAGATCCTTTCCCAAGAACAACAGAAAATGATCGAGTACCAG
Seq A exon
CAGAGACCTGTGTCATTCAAGGATGTGGTAGTGGGCTTCACGCAAGAGGAGTGGCATGGGCTTAATCCTGCACAGAGGGCCCTGTACCGGGATGTGATGCTGGAGACCTATAGCAACCTCGTCTCAGTGG
Seq C2 exon
GTTATGAAGGCACCAAACCATACGTGATCCTCCGGCTGGAGCAGGAAGAAGCACCCTGGATTTGTGAGGCAGCTTGCTTAGGCTGCCACTGTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047219_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=WD(100=93.2)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAGATCCTTTCCCAAGA
R:
AACAGTGGCAGCCTAAGCAAG
Band lengths:
139-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development