HsaEX0074427 @ hg19
Exon Skipping
Gene
ENSG00000167766 | ZNF83
Description
zinc finger protein 83 [Source:HGNC Symbol;Acc:13158]
Coordinates
chr19:53097334-53120068:-
Coord C1 exon
chr19:53119971-53120068
Coord A exon
chr19:53117014-53118050
Coord C2 exon
chr19:53097334-53097557
Length
1037 bp
Sequences
Splice sites
3' ss Seq
GGGATCCTTATATCTTGTAGGTA
3' ss Score
6.76
5' ss Seq
AAGGTCTTC
5' ss Score
0.45
Exon sequences
Seq C1 exon
GCTGGAGTGCAGTGGCACAATCTCGGCTCACCACCACCTCCGCCTCCCGGGTTCAAGCGATTCTCCCGCCTCAGCCTCAGAAGTTGCTGGAATTACAG
Seq A exon
GTATTTTTTCTAAATGTGAGATCAAGGAATTACCACCAAAAAAGGAGAGTAATACAGGAGAAATATTCCAGACAGTAATGTTGGAAAGACATGAAAGCCACGACATACAAGATTTTTGCTTCAGAGAAACCCAGAAAAATGTACATGACTCTCAGTGTCTGTGGAAACATGATTGAAGACATTATAAGCGAGTGCGTGTGACCTATAAGGAAAGTCTCATTGGTAGAAGAGACATGCATGGGAGAAAGGATGATGCACAAAAGCAGCCTGTTAAAAATCAGCTTGGATTAAACCCGCAGTCACATCTACCAGAACTGCAGCTATTTCAAGCTGAAGGGAAAATATATAAATATGATCACATGGAAAAATCTGTCAACAGTAGTTCCTTAGTTTCCCCACCCCAACGTATTTCTTCTACTGTCAAAACCCACATTTCTCATACATATGAATGTAATTTTGTGGATTCATTATTCACACAAAAAGAGAAAGCAAATATTGGGACAGAACACTACAAATGTAGTGAGCGTGGCAAGGCCTTTCATCAAGGCTTACATTTTACTATACATCAAATAATCCATACTAAAGAGACGCAATTTAAATGTGATATATGTGGCAAGATCTTCAATAAAAAATCAAACCTTGCAAGTCATCAAAGAATTCATACTGGAGAGAAGCCATATAAATGTAATGAATGTGGCAAGGTCTTCCATAATATGTCACACCTTGCACAGCATCGCAGGATTCATACTGGAGAGAAACCATATAAATGTAATGAATGTGGCAAGGTCTTTAATCAAATTTCACACCTTGCACAACATCAAAGAATTCATACCGGAGAGAAACCTTATAAATGTAATGAATGTGGAAAGGTCTTCCATCAAATTTCACACCTTGCACAACATCGGACAATTCATACTGGAGAAAAACCTTACGAATGTAACAAATGTGGCAAGGTGTTCAGTCGCAATTCCTACCTTGTACAACATCTGATCATTCATACTGGAGAGAAACCTTACAGATGTAATGTATGTGGAAAG
Seq C2 exon
GGTCTCCCTCTGATGCCGAGCCGAAGCTGGACGGTACTGCTGCCATCTTGGCTCACTGCAACCTCCCTGCCTGATTCTCCTGCCTCAGCCTGCTGAGTGCCTGTGATTGCAGGCGCGCGCCGCCACGCCTGACTGGTTTTCGTATTTTTTTGGTGGAGACGGGGATTCGCTGTGTTGGCCGGGCTGGTCTCCAGCTCCTAACCGGGAGTGATCCGCCAGCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167766_MULTIEX1-10/10=9-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.138 C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0),PF139001=GVQW=PU(92.1=83.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGGCACAATCTCGGCTC
R:
GAGGCTGGCGGATCACTCC
Band lengths:
312-1349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)