HsaEX0074432 @ hg19
Exon Skipping
Gene
ENSG00000167766 | ZNF83
Description
zinc finger protein 83 [Source:HGNC Symbol;Acc:13158]
Coordinates
chr19:53115620-53122315:-
Coord C1 exon
chr19:53122189-53122315
Coord A exon
chr19:53121881-53122018
Coord C2 exon
chr19:53115620-53118050
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTCACTGTCCCCTTTTTTAGATG
3' ss Score
11.78
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
Exon sequences
Seq C1 exon
GGTCTATTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATACAGAGATGTGATGTTGGAGAATTATAGGAACCTGGTCTCCCTGG
Seq A exon
ATGTTCTGCGTTCTTCATGATAGCTCAGTGGGGGTTCCAGAAGTAAAGAAGGCTTAAAACCTTATGGCTGGCAAGGCGTGGTGACTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAAGCTTGTGGATCACTTCAG
Seq C2 exon
GTATTTTTTCTAAATGTGAGATCAAGGAATTACCACCAAAAAAGGAGAGTAATACAGGAGAAATATTCCAGACAGTAATGTTGGAAAGACATGAAAGCCACGACATACAAGATTTTTGCTTCAGAGAAACCCAGAAAAATGTACATGACTCTCAGTGTCTGTGGAAACATGATTGAAGACATTATAAGCGAGTGCGTGTGACCTATAAGGAAAGTCTCATTGGTAGAAGAGACATGCATGGGAGAAAGGATGATGCACAAAAGCAGCCTGTTAAAAATCAGCTTGGATTAAACCCGCAGTCACATCTACCAGAACTGCAGCTATTTCAAGCTGAAGGGAAAATATATAAATATGATCACATGGAAAAATCTGTCAACAGTAGTTCCTTAGTTTCCCCACCCCAACGTATTTCTTCTACTGTCAAAACCCACATTTCTCATACATATGAATGTAATTTTGTGGATTCATTATTCACACAAAAAGAGAAAGCAAATATTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167766_MULTIEX1-7/10=6-10
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.055
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=5.0),PF0013017=C1_1=WD(100=10.4),PF0172213=BolA=WD(100=11.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF0013017=C1_1=WD(100=10.6),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF0013017=C1_1=WD(100=11.6),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF0013017=C1_1=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF0013017=C1_1=WD(100=10.3),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF0009621=zf-C2H2=WD(100=4.4)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGAGGAGTGGAAATGCCT
R:
TCCACAGACACTGAGAGTCATGT
Band lengths:
254-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)