HsaEX0074428 @ hg19
Exon Skipping
Gene
ENSG00000167766 | ZNF83
Description
zinc finger protein 83 [Source:HGNC Symbol;Acc:13158]
Coordinates
chr19:53122189-53164096:-
Coord C1 exon
chr19:53164015-53164096
Coord A exon
chr19:53158814-53158940
Coord C2 exon
chr19:53122189-53122315
Length
127 bp
Sequences
Splice sites
3' ss Seq
AAATGTGTGTTTAATTTTAGGGA
3' ss Score
8.67
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
AATTAATTTCCAAAGACTCATGTTACATGAGAAAGCCACCAAGAAGACCAAAGAAAAGGAGACAAGGATGGCTCTTCCTCAG
Seq A exon
GGATGCTTGACTTTCAGGGATGTGGCTATAGAATTCTCTTTGGAGGAGTGGAAATGCCTGAACCCTGCACAGAGGGCTTTATACAGGGCCGTGATGTTGGAGAACTACAGGAACCTGGAGTCTGTGG
Seq C2 exon
GGTCTATTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATACAGAGATGTGATGTTGGAGAATTATAGGAACCTGGTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167766_MULTIEX1-3/10=2-6
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTTCCAAAGACTCATGTTACATGA
R:
GGAGACCAGGTTCCTATAATTCTCC
Band lengths:
201-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)