HsaEX0074429 @ hg19
Exon Skipping
Gene
ENSG00000167766 | ZNF83
Description
zinc finger protein 83 [Source:HGNC Symbol;Acc:13158]
Coordinates
chr19:53138319-53158923:-
Coord C1 exon
chr19:53158814-53158923
Coord A exon
chr19:53141565-53141854
Coord C2 exon
chr19:53138319-53138406
Length
290 bp
Sequences
Splice sites
3' ss Seq
AGTTTGCATCCCCGTTCCAGATA
3' ss Score
6.7
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GGATGTGGCTATAGAATTCTCTTTGGAGGAGTGGAAATGCCTGAACCCTGCACAGAGGGCTTTATACAGGGCCGTGATGTTGGAGAACTACAGGAACCTGGAGTCTGTGG
Seq A exon
ATAATTCCAGGGCTTTTGAATCATGCCTCAGCCTTCCTGGCCGGTCTCGCCTCCAAAACCCGAAAAATGCCTCTGCGCTGGGAACGATGCTGAGAGACTCACAGGTCCCGCCCTGGCCCCGCCCACTGCTGGTTCTAAAGGGGAAAGTCTCTCGGCTTCCCACCCCGCCCCTACCTCATCCAGGCCCCGCCCACCTCGCGGGCCCCGCCCAGACCTGGCTTCTGTACTGCGCGCGCACATGCGCGCAAACCCGGAAGCGGATTATGTGGAGTGAAAGTTACACCGTGGCG
Seq C2 exon
GATTGACTTCTAAGGACTCTTGGTACATGAGGAAGAAACCCGGAAGGGGAAGAGGAAAGCAAAGGCGTCAGGAATGGTTCTTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167766_MULTIEX1-4/10=3-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGTGGCTATAGAATTCTCTTTGG
R:
GAGGAAGAACCATTCCTGACGC
Band lengths:
196-486
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)