HsaEX0074455 @ hg38
Exon Skipping
Gene
ENSG00000213799 | ZNF845
Description
zinc finger protein 845 [Source:HGNC Symbol;Acc:HGNC:25112]
Coordinates
chr19:53333749-53341322:+
Coord C1 exon
chr19:53333749-53333792
Coord A exon
chr19:53340824-53340925
Coord C2 exon
chr19:53341235-53341322
Length
102 bp
Sequences
Splice sites
3' ss Seq
CCTCCCTCCCTCTGCTCCAGCCA
3' ss Score
8.41
5' ss Seq
CAGGTGCAA
5' ss Score
2.83
Exon sequences
Seq C1 exon
AAACCCGGAAGCGGATCGCATGGAGTGATGGTCCCACCGCAGCG
Seq A exon
CCATGCAGGCGTCTTTCCTGTTCCTGGGCCGAGGTTGCTCCTGCCTCAAGGCGTTCATGTGGGCTGTCCCTCTGCTGGAACTCGCTGGCCCCTCAGCTGCAG
Seq C2 exon
GATTGACTTCTAAAGACTCTTGGTACGTGAGGAAGAAACCCGGAAGAGGAAGAGGAAAGCAAAGGAGTCAGGGATGGCTCTTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213799_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCCGGAAGCGGATCG
R:
TGAGAAAGAGCCATCCCTGACT
Band lengths:
131-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development