HsaINT1047704 @ hg38
Intron Retention
Gene
ENSG00000213799 | ZNF845
Description
zinc finger protein 845 [Source:HGNC Symbol;Acc:HGNC:25112]
Coordinates
chr19:53333749-53340925:+
Coord C1 exon
chr19:53333749-53333792
Coord A exon
chr19:53333793-53340823
Coord C2 exon
chr19:53340824-53340925
Length
7031 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
CCTCCCTCCCTCTGCTCCAGCCA
3' ss Score
8.41
Exon sequences
Seq C1 exon
AAACCCGGAAGCGGATCGCATGGAGTGATGGTCCCACCGCAGCG
Seq A exon
GTGAGTTTTGCTCTGTGTTGTGTTAAGTCTGCGCTTCCCAAGTCCCCGGCGCTTCTGTACCTGGGACGTGGGGTCCCCATAGACCTGGAAATTCTCACCCGTGTTCCTTCACCTAGAGCAAATTTAGACGTCCTCGTCAGAGTCCAGGGGTCGCTTCCTTTTGGGTTTAAAGTCGCCCTGAGGATGGTCCCTTCCCGAATCTTTCTGCTATAGGGCAATGTATACACTTCCCATCGCGTAGTTTCCCTGCTCAAAACCTTTTTCTGACTCCTCCCGACCCGCACTTTTTAAAGTCCTTACCGCGAGGCGGATTCCCGCCCTTGGCGCCTCCCAGTCTTGTCTTAAGGCGCCGTCGCCCCCCACCTCCCTCCTCGTTCCAGGCCCTTATGCTCCCCAGGTCTCCCCACCGCAGTCACCGCTTACCCTGAGCCCGCGTTGGGGAGGTGCCCGGGGCTGTCCTATGACACCGGGTGTTCTTGCCTGCCCTGCACCAGCCCCTGGAAAATGCGCTCCTCCGGGATGCAGGCGTCTTACTCCAAAGCCCTCCTGTGATTGTGTTGGCCAAAGGGATCAGGAGACTGAGAGAGAGAGCAGTAGAAAACCTGAGACAGAGAAAAGAAGAATGAGAAAGACCATAACAGATGGCAAAGTAGAGGATGAGTGAGGGATTTGCCAAGAGAGAGCAAAAATGAAAAAAACAAAACAAAACAAAAAACAGCAGGAGGAGCAGATCCCAGGGAAAAAGAAAACAAGAGCTAGAGAGAGAAGGGGAGAATGAGAGATATGTACAGAATTAGGGAGGGAAGCACAGTAATGAAGAAAGGGGGGCTGGGCGCAGTGGCTCACGCCTGTAATCCTAGCACTTTAGGAGACTGGGGCAGAGGGATTGCTTGAGTCCAGGAGTTCAAGACCGGCCTGGGCAAAATAGTGAGACCCCCCCCCCCATCTCTGTCAAAAAAAAAAAAAATTTAACTGGGCGTGATGGTGCACACCTGTAATCCCAGCTGCTCTGGAGGCTGAGGCAGGAGGATCACTTGAGCCCAGGAGGTCCAGGCTGCAGTGAGCAGAGATCATGCCACTGCACTCCAGCCTGGTCAACAGAGCAGAGCCTGTCTCAAAAGATTAAAAGGGGTGGGGGACTTTGGGTTCAGATGAGTGGGTGAGTTCATTGGATATGATTAGTTGTGATATGTTGACTTCTGTTTATATAATCTAATAACTTAGAACTTGTTTAAATTATACAGATGATATTGAGAATTTTAAAATTCCTATCTATAAGACACATACATTCTGTAAATCTTGGCATTAGAGGTCAGCTTCCACTTGGAATCCCTATTCAGCCAGAGGGTAGTGACTTAATTCAATTGTGAGAGCCTCTCTTCCCTCTTCCCATGGTGAGGTAGGAAATGGGGCAGTGAAGTGGGAGAAAAAAATCACTTTCTGTTATTATGTAATAATTTTAATTTAATTAATTAATTTATAGTTTGAGACAGGGTCTGGCTCTGTCGCCCAGGCTGGGGTGCAGTGGTGTGATCTCCTCTAACTGCAGCCTCGACCTCCTAGGCTCAAGCGATCCTCTTACCTCAGCCTCCTGAGTAGCTGGGACCACAGGCGTGAGCCACCAAGTCCGGCTAGGTTTTGTATTTTTTTTTTGTAGAAATGGGGTTTCACTGTTTCCCAGGCTGGTCTCAATTCTGGCCTCAAAGGATCGTCCTGCCTTGGCCTCCCAAATTACTGGGATTACAGGTGGAATTACAGAGAGGAGCCACCGTGCCTGGCCTACATAGTCGTTTTTTGTTTTTTGTTTTTGTTTTTGTTTTTGTTTTTTTGAGATGGAATCTCACTCTTGTCCAGGATGGAGTGCAATGGCACAATCTCGGCTCGCTGCAATTTCCGCTTCCCAGGTTCAGACTGATTCTACTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGAGCCACTGCATCCAGCTAATTTTGTGTTTTTAGTAGAGACGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCAAACTCCCAACCTCAGATGATCCACCCGCCTTGGCCCCCCAAATGCTGGGATTACAGGCATGAGCCACCACGCCTGGCCCATAGTACTTTTTAAAAGGGACATCAGGGCGTAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCGGAGGCAGGTGGATCACAAGGATCACAAGGTCAGGAATTCAAGACCAGCGTGACCAACATGGTGAAATCCCATTGCTCCTAAAAATTCAAAAATTAGTTGGGCATGGTGGCATGCACCTCTAATTCCAGCTACTTAGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCCAAGATTGCGCCACTGCATTCCATCCTGGGCGAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAGGAACATCAAAGCTGGGCGTGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGCCAATCACCTAAGGTCAGTAGTTTGAGATCATTCTGGCCAACATGGTGAAACCCTGTGTCTAGTAAAAATACTAAAAAAGTAAGCTGGGCATGGTGGCATGCATCTGTAGTTCCAGCTGCTCGGGAGCCTGAGGCATGAGAATCACATGAACTTGGGAGGTAGAGGTTGCAGTGAACCGAAATGGTACCACTGCACTGCAGCCTGGGGGGCAGAGCGAGGCTTCATCTCAAAAAAACAAACACCACCACCAAAAAATGAAAGCAAAAGGCACATCAAAAGTGCTTTTGTTCTCGTTGTGTAACATATTTTCTTTTTTTTCTTTCTGGTTCCTCTTCCTTCCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTGCAGTTTTACTTTGAGATAAATCTTAGTTTTAAATATTTCTTTTTTAATACATAATCACTTCTGAAAGATGCATTTGCAGCATCCTATAACCAGCTCACATTGTTCAGTTATTTTCCCATTGACATCTGAATTTGTTCGATTTTTTAAAAAACAATTTCCAAATAGTTTCTGTTTGAAATTAGTTGCGTCCAGTTCAGATCGAGGTCTGCATGCTTTCTAGTCTTTATTATTTATTGGAAACCTTTAACATCAAAATGTAGTTTAACGAGTTAGCCTGTTTTTCAGTTTTGTTGTCATTTGTTAAAATCTTGAGCTGTGAGCTATTAAGTGCATGTTTCCCTCAAGGCACCTCTGGTCCATGTGGACAAATGTTGAAAGCCCAACTCCTCACTGTGGCTCCATAGCCCTGTGTCCAGGGCCCCTGCCAGTGTCCAGCCTCCTCCTGGGAGCTTGCCCTCATCGCATGACTGTCTCTGCCCCAGTCATATTTGCTTTTCTCTTTTCCCAAACACTAAAACCCTTCCTGTCTCAGGTTGCTGTCCCTGCTCTTACCCTGTGTTCCTAAATGATCACGGCCCTGTGCCTTTCTTCTCCTTCAGGTCTAGGCTCAGAGATGTCTCCCATGCCCTCCCACCCCCATCTGAAGTTCCCTCTGCCCGTCAGTCTCTATCACGTTACTCAGATTTTATTATCTCTGCATCAGTCACATCAGAAACACTCTTTTTATTTTATTTTCTTTTTTTTAGACAGAGTCTCACTCTACCGTCCAGGCTGTGAGTGTAGTCTGGTGACCTTCTCTCCCTGCAACCTCTGTCTTCTAGGTTCAAGCAATTCTTCTGCCTCACCCTTGCAAGCAGCTGAAATTAAATGTGTGTGCCACCACAGCCAGCTAATTTTTGTATTTTAATTTTAATTTAATTTAATTTAATTTTACTTTTGAGTTTCAATCTGTCTCCCAGGCTGGAGTGCAGTGGCGTAATCATGGTTCACTGCAACCTCCTCCTCCCGGGTTAAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGAGTCGCACCAAGCCCAGCTACTTTTTGTATTTTTAGTAGAGATGGAGTTTCACCATCTTGGTCAGGCTGGTCTCGAACTCCAGACCTTAAGTAATCCACCTGCCTTGGCCTCCCAGAGTGCTAGGGTACAGGTATGAGCCACCGCGCCCGCCCCAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCTTGTTGGCCAGGCTTATCTCAAACTCATGACCTCAGGTGATCCGTCTGCCTAGGCCTACCCGTGTGCTGGGATTACAGGCAAGAGCCACAGTGCCCGCCCAGAGATGCCTTTCTGCATGGATTATTTTGAGTGTTTTGTGTCTCCCTTCTTTGGAGGATGCACAGTTCCCATCTTGGCCACAGGACAACTGCAGCACCTACTCTGGGGTTGTGGTTCAGATGCTGAGGCGTCTTCAGGGAAGACTCAGGGCCTGGGGCAAGTGCAAGGATGGTCCCACATTTCTTCTGGAAATTTCAATTCTAATTGATCTGAACTTCCTGTGGCTATTTATTTCAGTCAAAATAAAAGGAGAAGGCCTCACTAAGGTCAGAAAGCCCTACAGACCAGACCCTGTGTCCTCAGGCAGTGCCGAGGCATCTCCATTTTTGTCATCTGTGTCACTGCCTCACTCCAGCTCCCGGGTCTCCGTGCTCTGTACATCACCAGGACCCAGTTTGGCCATTATGGGCAGGGGCTTTGCCACCAGTAGGTGATGCGCTCAGCGTCAAGGGTCCTGGATTCCCTTCAGGAAGGGTGGGGAGAAGGTCAGGGACCTGAGGGGCATGAAGGACACACTCCTACACAACTAGTTCTGTTCCGGAGCAGCTGGAGGCTCCGTGACTTTAGGAAAGATTCTTCCAAGAATCAAGAGTGCAAACAGCACCGTGAACTGCAGCCCGAGGGCCACCTCCTCCTGCCAGGCCAGTGGTGATGACGCTCTACTGGCTTTTCCTTGCCTGTCACAACACGTGAGCACACACACACACACACACACACACACGCACACACACACTCCCACACACACAGTCACAAGGCAGCTGGGGAGTCGAAGGTCAAGATGCTATAATGTAAATGTGTGGCCGTGTGTGGTGGCTCACGCCTGTAGTCCTACAGCTTTGGGAGGCTAAGGCAGGCAGATGATGAAGTCAGGAGTTCGAGACCAGCCTGGCCAACATAGTGAAATCCCATCTCTACTAAAAAAAAAAAAGAAAGAAAGAAAGAAAAAAAAATGAGCCAGGCATGGTGGTGCACATCTGTAATCCCAGCTACTCGGGAAACTGAAGCAGGAGAATGGCTCGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATCGCGCCATTGCACTACAGCATGGTGACAGAGCAAGACTCCATCTCTAAATAAATAAATAAATGTGCTATAATGTAAATGTGGAGCACAAATATTTTTTCCACAAAGAGGGGCCACTGGTTCCTGGGAAGGGAGTTTGAGGGTTATAGCCCTGGTCATGGCCAGAAGACTTAGGAACTGGAGGAAGGAAAAGCTGTATTTATCCTCACAGGATGCTCCTGTGAACAGATGGGCTGATCTAATGGAGTGACATTTAGAAAAAGGGGTTTTTCTCTCCACCCAGCACACACCGTCACCCACCCTATGCACAGTCCTCCCTTTCCCGTTGTCTTCTCTAGAATGACAAAGTTGATGCTTCCCCAGGTGGGCGTCTGAGGGAGGGGAGTGGTTTCCCTGCCTGTCCTTGATCCCCTCCCTCAAGTCTTCCACCTTCGTGTCCGCTGTTCTGTTCTGACACTCATTGCCTGCAATTCTATCGGTTTGCACCATCCCAAGACCCAACTAAGACCCAAGGATTTGAGTCTGGGAATATTTAAGCCAATGTCATTGCCAAGTCAGAAGTCTTAGACCCCAGGAATTTTTCTTCATTGAGAGTCTGGGCAGCCAGGAAGCCTCTCCTCTTTCTGCAGAGTTGAGGTCAACCAGGACCCTGGCACATGTGAGACCCCAGAGGGGACATACTAGTATCACTCAGTCATTCTCATTCATTCACTCACTCAGTAGCTATGAAGCTATAGTATATGCCAGGGGACACAAATAGAGGTGCTGTCTGTGCCAGGGATCAAAATGTTAAACCAACAGACTATCCTTCCCTGCTTTATCCAGGTTATTTTTCATTTTTATTTATTTGAGGTGGAGTCTCACTCTGTCACCCAGGCTGAAGTGCAGTGGTGCGATCTTGGCTCACTGCAACCTCCAACCTCTGGGTTCAAGCGATTCTCGTGCGTCAGCCTCCCAAGTAGCTGGGACTACAGGCACACGCCACCATGCCTGGCTAATTATTTGTTTATTTATTTTGAGACAGAGTTTTGCTCTTGTGTCCCAGGCTGGAGTGCAGTGCCGTGATCTTGGCTCACTGCAACCTCTGCCTCTGGAGTTTAAGCGATTCTCATGCCTCAGCCTCCTGAGCAGTGGCGATTACAGGCGTGTGCTACCATGCCCAGCTAATTTTTGTATTTTTGGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTTTCGAACTTCTGACGTCAAGTGATCTGTCCGCTTTGGCCTCCCAACGTGCTGGGATTGCAGGTGTGAGCCACTGTGCCCAGCCTCATCTCGTGGCTTTAAACTTTACCCCCATGGCCCCATGGCCCCTGCAGACCTCTCCCCTGAACGCTACAGTCCTGTGTCCAGTTGACTCCTTAACTCTCTGCTGGGAGGATGAACAGGCATCTCCACCTTCATGTGTCCAAAGGTGACTTCCCGAACTTCCGTAAACGCATTCCCCCATGCTCCTGCCCTTCTCAGATGAGGGTGACCTTGTGCTTCCTAGGATATCACTAAAATCTCAGCATGCTTTTAAAATGTAAAGGATAATTACATTGTTTATAAGGGTTTTAATTTGTAATATAAAGAAAAAATTACATGTTTACTCACAATGGGTGAAGAAATTCATCATTTTAAAAATTCTTTGGAGGTGTGGGAGAAAAATGTTAGAAGACCTCATCCCTGCCTGATCTGCCCTCCCAGGTCCTCTCTGACCTCATCTGTTTCCCGTGTCCTCCTCCCTCCCTCTGCTCCAG
Seq C2 exon
CCATGCAGGCGTCTTTCCTGTTCCTGGGCCGAGGTTGCTCCTGCCTCAAGGCGTTCATGTGGGCTGTCCCTCTGCTGGAACTCGCTGGCCCCTCAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213799:ENST00000595091:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains