HsaEX0074485 @ hg38
Exon Skipping
Gene
ENSG00000167232 | ZNF91
Description
zinc finger protein 91 [Source:HGNC Symbol;Acc:HGNC:13166]
Coordinates
chr19:23306809-23358845:-
Coord C1 exon
chr19:23358730-23358845
Coord A exon
chr19:23338727-23339054
Coord C2 exon
chr19:23306809-23309097
Length
328 bp
Sequences
Splice sites
3' ss Seq
ACTTTTTTTTTTTTTTTGAGACG
3' ss Score
3.61
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
CAACGCTTTTGACAAGTCAAACTTTTCTAAACATCAAGAAAATCATGCTGCTGAGAAATCCTAGAAATGTGAAGAATGTGACAAAGCCTCTAAATGATTGTCACACTTGATCGTAG
Seq A exon
ACGGAGTCTTGCTCCATCGCCAGGCTGGAGTGCAGTGGCGCGATCTCGTCCCACTGCTCACTGCAACCTCTGCCTCCCCTATTGAAGTGATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGACTACAGGCACACACCACCACGCTCAGCTAATTTTTGTATTTTCAGAAGAGACGGGGTTTCATCATATTCACCAGGCTGGTCTTGATCTCTTGACCTCGTGATACCCTCACCTCACCCTCCCAAAGTGCTGGGACTACAGGCGTGAGCCACCGCACCCAACCAAATCTATACATTTCAATGAAGGATTTAATTTATTTATATTCAAG
Seq C2 exon
GGCCCAGACAGAAGAGAAGAGTCACATCATCTAGATGATGAATGAAAAGATATGTCATTATTCTCCTTTGGGCAGTGCTTCTGCAGAAAAGTTGCACCTTCTAGGTGTTGGACTCAGCAATATATCACAATGTCTGCAGTATTTTGGAAGGAGAGGAGAGTCACCATTACTTAGGTGCTAGGCCCAGCAATACATCTCAAGCACTTCTTGGGCAAAGCCCAAGCAGTAAAAAAGAGTCACATTACCTAGGTTCTGGGTATAGCAATATGTCACAAATGCCCCTAAGAAGAGGGCCCAGGAAAAGAGAGTCACCTTGGTGAGAATGTCAGAGATATTCCATTTTTGGGTATTCACAAAAAAGAATAAAGTCCCATAACCTAGAAGGTGGGCTCTGCTCCATGACACAAATCACCCTAGTGGGCAGGTCCATTAAAGAGAAGGCTGTCAAAGCACATAGATGCTGGGCAAAGTGATATGTCATAATCCCCATGATGATAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167232_MULTIEX1-11/11=6-C2
Average complexity
C2*
Mappability confidence:
88%=88=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAAGAATGTGACAAAGCCTCT
R:
TTCCTGGGCCCTCTTCTTAGG
Band lengths:
350-678
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development