HsaEX1000001 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr6:30262295-30293280:+
Coord C1 exon
chr6:30262295-30262342
Coord A exon
chr6:30262508-30262757
Coord C2 exon
chr6:30292403-30293280
Length
250 bp
Sequences
Splice sites
3' ss Seq
ATGATTATTTTCTCCTGTAGCTT
3' ss Score
8.74
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GCAGCAATTGTGCTCAGTACTCTGATGCATCTCATGATACTTGTAAAG
Seq A exon
CTTGAGACAACTGCCTTGAGTGGGACTGAGAGATACAAAATTTCTTCAGGTCCTTCCTCTGACACACACCATTGTAATTTCAAGAGCTCCTGACTTCTATATCTGCACTTGACACGTGAATATATCTATGTGTCTGTGTTCCAGTTAGCATAATGTGAGGAAATGGGCTACTGGTCCACCACTGCCACCAGGACCACCACCCCACACTAACCTGTCCTCTCTTCCCCGGTCAAGTTTTTTTTCAACAGAG
Seq C2 exon
AGTTCTCACCACCTCCTCCCAGGCTAAATCCTTCATGTTGCAGGAGACAGAGAATCCCAGGTGAGACCCGGACTTTTTCTCCTCCCTCCCTTCCTTTTTTCACCGTGTTCAGGATAAATTATCTTGGTTTTGTTTCTGGAGGGAAAAGGGCAGAGAGGCCCTGACTTGAATCTCAATCACATTTCTGCACACAGTACCTGAGGAGACAGAATAGCAGAGGGGTGGGAACAATTAACATTGCTTTATGGGCTTTAGAATGGAGAAAAAATAATTCCCACTCTTTTTTCTTTTACCCAAATCCAACTTCAGTTTTCTCTCCAACTCTCTAAAACCACCACCAATACTATTATCACATCATGTGTAGCTACTTGGGGGGTGGTGAAAGGCTGAGTACGCATCATGTTCAGGTAGTAGGGTGTTAAACGAAATAGTTCCTCACAGCAATGCCCAAAGTCATCCTTGGTCACAATAAAGGAGAATAAAGGGAAAAAAGTATGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000241166_MULTIEX1-2/2=1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTACTCTGATGCATCTCATGA
R:
TCTCCATTCTAAAGCCCATAAAGCA
Band lengths:
298-548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains