HsaALTD1051391-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000270604 | HCG17
Description
HLA complex group 17 (non-protein coding) [Source:HGNC Symbol;Acc:HGNC:31339]
Coordinates
chr6:30254347-30326454:-
Coord C1 exon
chr6:30326354-30326454
Coord A exon
NA
Coord C2 exon
chr6:30254347-30254464
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
ATTTCCAAATTATTTGTTAGATA
3' ss Score
4.36
Exon sequences
Seq C1 exon
TAGCTGTGGCGGCGGCCAATTACGTGGCGGACCTGCGGGGCTAAGCTGGCACGTCACTTCCGACTAGTGGAGTTTTTAGCCTTTTAACATTCAAGGATTAG
Seq A exon
NA
Seq C2 exon
ATACATTTCATCAATGAAGCCTTCTGGACCTGGAGTTTCCTATATGAGAAGGATTTTGATTACACATTCAATTTCTACAATCAATATATGACTGGCCACATTTTCTATCTCTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000270604-1-6,2-6-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAATTACGTGGCGGACCTG
R:
CTGAGAAGAGATAGAAAATGTGGCCA
Band lengths:
204-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains