HsaEX1000169 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr19:15760815-15769714:-
Coord C1 exon
chr19:15769585-15769714
Coord A exon
chr19:15761085-15761149
Coord C2 exon
chr19:15760815-15760897
Length
65 bp
Sequences
Splice sites
3' ss Seq
TGCCACCTTCTCTCCCACAGGCA
3' ss Score
11.9
5' ss Seq
GAGGTGCTG
5' ss Score
2.64
Exon sequences
Seq C1 exon
GCCATGACACCACAGCCAGTGGTCTCTCCTGGGTCCTGTACAACCTCGCGAGGCACCCAGAATACCAGGAGCACTGCCGGCAGGAGGTGCAAGAGCTTCTGAAGGACCGCGATCCTAAAGAGATTGAATG
Seq A exon
GCATTATCTGCATCATCAACATTATAGGAATCCATCACAACCCAACTGTGTGACCGGATCCTGAG
Seq C2 exon
GTCTACAACCCCTTCCGCTTCAACTCAGAGAACAGCAAGGAGAGGTCACCTCTGGCTTTTATTCCCTTCTCTGCGGGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
Hs.438274_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCCAGTGGTCTCTCCTG
R:
AGGTGACCTCTCCTTGCTGTT
Band lengths:
170-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains