HsaEX1001273 @ hg38
Exon Skipping
Gene
ENSG00000154263 | ABCA10
Description
ATP binding cassette subfamily A member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr17:69156832-69164154:-
Coord C1 exon
chr17:69164074-69164154
Coord A exon
chr17:69158010-69158047
Coord C2 exon
chr17:69156832-69156923
Length
38 bp
Sequences
Splice sites
3' ss Seq
TGTCTTTTGTTTGTTTCTAGTAT
3' ss Score
9.43
5' ss Seq
CCTGTGAGC
5' ss Score
3.28
Exon sequences
Seq C1 exon
CTCGACTTTATGAGAAACTTGGACAGTCTGGACAATAGAATAAATGAAGTCAATAAAACCATTCTTTTAACAACCTTAATA
Seq A exon
TATTTATCAAGAATGAATCTGGAATCTTCTCAAAGCCT
Seq C2 exon
CCATACCTTCAGAGTGTTATTTTCCTTTTTGTCATAAGGTGTCTGGAAATGAAGTATGGAAATGAAATAATGAATAAAGACCCAGTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154263_MULTIEX3-1/4=C1-2
Average complexity
S
Mappability confidence:
90%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(7.2=100)
A:
PF126982=ABC2_membrane_3=PD(0.6=15.4)
C2:
PF126982=ABC2_membrane_3=PD(3.3=38.7)
Main Inclusion Isoform:
ENST00000269081fB8333
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACTTGGACAGTCTGGACA
R:
TCCAGACACCTTATGACAAAAAGGA
Band lengths:
116-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains