HsaEX1001490 @ hg38
Exon Skipping
Gene
ENSG00000175164 | ABO
Description
ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase [Source:HGNC Symbol;Acc:HGNC:79]
Coordinates
chr9:133257409-133259866:-
Coord C1 exon
chr9:133259819-133259866
Coord A exon
chr9:133258097-133258132
Coord C2 exon
chr9:133257409-133257542
Length
36 bp
Sequences
Splice sites
3' ss Seq
GCGGCGCTTTGCGCTTGCAGGAT
3' ss Score
8.69
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
CATGGCTGTTAGGGAACCTGACCATCTGCAGCGCGTCTCGTTGCCAAG
Seq A exon
GATGGTCTACCCCCAGCCAAAGGTGCTGACACCGTG
Seq C2 exon
TAGGAAGGATGTCCTCGTGGTACCCCTTGGCTGGCTCCCATTGTCTGGGAGGGCACATTCAACATCGACATCCTCAACGAGCAGTTCAGGCTCCAGAACACCACCATTGGGTTAACTGTGTTTGCCATCAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175164-'10-17,'10-14,11-17
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCTGACCATCTGCAGC
R:
AACTGCTCGTTGAGGATGTCG
Band lengths:
122-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains