MmuEX0003327 @ mm10
Exon Skipping
Gene
ENSMUSG00000015787 | Abo
Description
ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase, transferase B, alpha 1-3-galactosyltransferase) [Source:MGI Symbol;Acc:MGI:2135738]
Coordinates
chr2:26845956-26848307:-
Coord C1 exon
chr2:26848251-26848307
Coord A exon
chr2:26846574-26846609
Coord C2 exon
chr2:26845956-26846090
Length
36 bp
Sequences
Splice sites
3' ss Seq
TCTGGTGTTTTCTTTTTCAGGAA
3' ss Score
12.8
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
CTACCTGTTCCTAAGCTTCAGAAGCCAGAACTTGGGTCACCCAGGAGCTGTGACTAG
Seq A exon
GAATGCCTATCTGCAGCCAAGGGTGCTAAAACCCAC
Seq C2 exon
TAGGAAAGATGTTCTTGTCTTGACTCCTTGGCTGGCGCCCATCATCTGGGAGGGGACCTTCAACATCGACATATTGAATGAGCAGTTCAGGATTCGGAATACTACGATTGGACTGACTGTATTTGCTATCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015787-'6-8,'6-7,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=PU(4.3=65.0)
A:
PF034148=Glyco_transf_6=FE(4.0=100)
C2:
PF034148=Glyco_transf_6=FE(15.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCCAGGAGCTGTGACTAG
R:
TTCCGAATCCTGAACTGCTCA
Band lengths:
120-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types