HsaEX1001497 @ hg38
Exon Skipping
Gene
ENSG00000175164 | ABO
Description
ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase [Source:HGNC Symbol;Acc:HGNC:79]
Coordinates
chr9:133248854-133257542:-
Coord C1 exon
chr9:133257409-133257542
Coord A exon
chr9:133255334-133256356
Coord C2 exon
chr9:133248854-133251152
Length
1023 bp
Sequences
Splice sites
3' ss Seq
CCCGTCCGCCTGCCTTGCAGATA
3' ss Score
10.99
5' ss Seq
TACATACAC
5' ss Score
-16.27
Exon sequences
Seq C1 exon
TAGGAAGGATGTCCTCGTGGTACCCCTTGGCTGGCTCCCATTGTCTGGGAGGGCACATTCAACATCGACATCCTCAACGAGCAGTTCAGGCTCCAGAACACCACCATTGGGTTAACTGTGTTTGCCATCAAGAA
Seq A exon
ATACGTGGCTTTCCTGAAGCTGTTCCTGGAGACGGCGGAGAAGCACTTCATGGTGGGCCACCGTGTCCACTACTATGTCTTCACCGACCAGCCGGCCGCGGTGCCCCGCGTGACGCTGGGGACCGGTCGGCAGCTGTCAGTGCTGGAGGTGCGCGCCTACAAGCGCTGGCAGGACGTGTCCATGCGCCGCATGGAGATGATCAGTGACTTCTGCGAGCGGCGCTTCCTCAGCGAGGTGGATTACCTGGTGTGCGTGGACGTGGACATGGAGTTCCGCGACCACGTGGGCGTGGAGATCCTGACTCCGCTGTTCGGCACCCTGCACCCCGGCTTCTACGGAAGCAGCCGGGAGGCCTTCACCTACGAGCGCCGGCCCCAGTCCCAGGCCTACATCCCCAAGGACGAGGGCGATTTCTACTACCTGGGGGGGTTCTTCGGGGGGTCGGTGCAAGAGGTGCAGCGGCTCACCAGGGCCTGCCACCAGGCCATGATGGTCGACCAGGCCAACGGCATCGAGGCCGTGTGGCACGACGAGAGCCACCTGAACAAGTACCTGCTGCGCCACAAACCCACCAAGGTGCTCTCCCCCGAGTACTTGTGGGACCAGCAGCTGCTGGGCTGGCCCGCCGTCCTGAGGAAGCTGAGGTTCACTGCGGTGCCCAAGAACCACCAGGCGGTCCGGAACCCGTGAGCGGCTGCCAGGGGCTCTGGGAGGGCTGCCGGCAGCCCCGTCCCCCTCCCGCCCTTGGTTTTAGCAGAACGGGTAAACTCTGTTTCCTTTGTCCGTCCTGTTGTGAGTAACTGAAGCCTAGGCCCCGTCCCCACCTCAAATCACACACACCCCCTCCCCACCACAGAGACACCATTACATACACAGACACACACAGAAAGACACACACAGACACAAAATCACACACACACCCTCCCCGCCACAGAGACACCATTACATACACAGACACACACAGAAAGACACAGACACAAAATCACACACACACCCTCCCCGCCACAGAGACACACCATTAC
Seq C2 exon
TCTCACAGGTCCTTCCCCAGGTCCAAGAGGCTCTTCTGTGTCCTGATGACAAGTAGCTGCCTAGCCGTGGTGGCACCTCCTATCACATGTTAAGGGACCCCTCCCCAGGGCCACACCTGGCAGAAGGTGGCTTATGATGTTCGCAGCTTGAAAGTAGTGTAAACCAAAGATAAAATTCTAAGCCCACTCCCCCAGCCATCGGAATGGACCCCTCCTCTTGGCCAGGGCACTCCAAAGTTAACCTGAAAAACCGGTTCAGGCTGTGAAGAGAAGGTGGAGTGGACATGCCTCATTTATGTCCTCCTCCCTTTTGGAATTCAGCAAAGCTGACCAGCATGAACATTAACACAGACCTTAAGTCTGATTAGTGGCATTTACAATCTATACTCTCTGAAGCGTGCTACCTGGAGTCTTCCTTTGCATGATAAAACTTTGGTCTCCACAACCCCTTATCATAACCTAGACACTCCTTTCTAGTGATAATAACTCTTTCAACCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175164_MULTIEX1-9/11=8-C2
Average complexity
C3*
Mappability confidence:
100%=100=88%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGGCACATTCAACATCGA
R:
CTTCACAGCCTGAACCGGTTT
Band lengths:
355-1378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains