HsaINT0001886 @ hg38
Intron Retention
Gene
ENSG00000175164 | ABO
Description
ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase [Source:HGNC Symbol;Acc:HGNC:79]
Coordinates
chr9:133250401-133257542:-
Coord C1 exon
chr9:133257409-133257542
Coord A exon
chr9:133256357-133257408
Coord C2 exon
chr9:133250401-133256356
Length
1052 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
CCCGTCCGCCTGCCTTGCAGATA
3' ss Score
10.99
Exon sequences
Seq C1 exon
TAGGAAGGATGTCCTCGTGGTACCCCTTGGCTGGCTCCCATTGTCTGGGAGGGCACATTCAACATCGACATCCTCAACGAGCAGTTCAGGCTCCAGAACACCACCATTGGGTTAACTGTGTTTGCCATCAAGAA
Seq A exon
GTAAGTCAGTGAGGTGGCCGAGGGTAGAGACCCAGGCAGTGGCGAGTGACTGTGGACATTGAGGTCTCTCCTTGTGTTCAAGACAGAGTGGGGTGGCGGCCAGCCTTGTCCTCCCAGAGGGTAGATGGGAAAGGTCATTCATGCAGCATCTTACTGAGCTCATGTGGGCTCGTGGGCTCGTGGGCTCGCCAGGTCGGTAAAACCCAGCTCCTTCTCCAGAGGCTGCGTCTCACCCAGGGATGGTGGCTTCTGCTGCCCCCTCCTCTCTGTAACTGTGGCCGGCCGTCATGCTGAGCCACCCCCTCAATACAAGGCTCCAGATGTTTCCTGCTCACTGACCAGAGATAGCAGGAGGGGGACACCTGTTTGCTGTCCTTGGACCCTAGAAAGAGGATGCTGGCAGAGCCGTGGTCACTTCTCTGTCAGATGTAGGTGGGGCAGGCAAAGCAGTTGGCCCCAGACACCAAAGGAAGTGGCTGACCCACAAGGCCCTGGGACTCTGGGCCAGGCCAGAGAGGGAGCTAGCCAGGCAACCGCAGACACATACTTGACTTCTCGGCAGCTGTGGGCAGCTGGGCCAGCGACAGTGGCGGAGGCCAGGAATGACTTACTCTTAGGAATAGGTGCAGTTCAAGCCTGGAGGGAGGAAGCTCTAGGGTGCAGAGGCGGGTGTGTGGAGGCCTCGCGTGCAGCTTATAATGAGGGAGCACGTGGCCGGCCTGGCCATAAGAGGGGCAGCTGCGTGGGGAGGCGTGGCTCAGGCCAGGCTGAGGGGGAGTGAGCAGACGCCAGCCTGCGGCCTGCTACCAGCCTCCAGCCACCTGCCCTCAGCCCTCCTTAGTAAGAGGGGGTGCTGGTGGTCCCCCATCGCTGGGAAGAGGATGAAGTGAATCGCAGCCCGAGGACTCGCTCAGGACAGGGCAGGAGAACGTGGTGCATCTGCTGCTCTAAGCCTTCCAATGGCCGCTGGCGGGCGGGTGCAGGACGGGCCTCCTGCAGCCCAGGGGTGCACGGCCGGCGGCTCCCCCAGCCCCCGTCCGCCTGCCTTGCAG
Seq C2 exon
ATACGTGGCTTTCCTGAAGCTGTTCCTGGAGACGGCGGAGAAGCACTTCATGGTGGGCCACCGTGTCCACTACTATGTCTTCACCGACCAGCCGGCCGCGGTGCCCCGCGTGACGCTGGGGACCGGTCGGCAGCTGTCAGTGCTGGAGGTGCGCGCCTACAAGCGCTGGCAGGACGTGTCCATGCGCCGCATGGAGATGATCAGTGACTTCTGCGAGCGGCGCTTCCTCAGCGAGGTGGATTACCTGGTGTGCGTGGACGTGGACATGGAGTTCCGCGACCACGTGGGCGTGGAGATCCTGACTCCGCTGTTCGGCACCCTGCACCCCGGCTTCTACGGAAGCAGCCGGGAGGCCTTCACCTACGAGCGCCGGCCCCAGTCCCAGGCCTACATCCCCAAGGACGAGGGCGATTTCTACTACCTGGGGGGGTTCTTCGGGGGGTCGGTGCAAGAGGTGCAGCGGCTCACCAGGGCCTGCCACCAGGCCATGATGGTCGACCAGGCCAACGGCATCGAGGCCGTGTGGCACGACGAGAGCCACCTGAACAAGTACCTGCTGCGCCACAAACCCACCAAGGTGCTCTCCCCCGAGTACTTGTGGGACCAGCAGCTGCTGGGCTGGCCCGCCGTCCTGAGGAAGCTGAGGTTCACTGCGGTGCCCAAGAACCACCAGGCGGTCCGGAACCCGTGAGCGGCTGCCAGGGGCTCTGGGAGGGCTGCCGGCAGCCCCGTCCCCCTCCCGCCCTTGGTTTTAGCAGAACGGGTAAACTCTGTTTCCTTTGTCCGTCCTGTTGTGAGTAACTGAAGCCTAGGCCCCGTCCCCACCTCAAATCACACACACCCCCTCCCCACCACAGAGACACCATTACATACACAGACACACACAGAAAGACACACACAGACACAAAATCACACACACACCCTCCCCGCCACAGAGACACCATTACATACACAGACACACACAGAAAGACACAGACACAAAATCACACACACACCCTCCCCGCCACAGAGACACACCATTACATACACAGACACGCAATCGCAGATACGCCCTTCCGGCCACAGAAACACACCATTACACACACATACACAGAAAGACACACACAGACACACAATCACACGCAGCCCCTCCCCGCCACAGAGACACACCATTACATACACAGACACACACAGAAAGACACACACAGACACAAAATCACACACACACCCTCCCCGCCACAGAGACACACCATTACATACACAGACACACACAGACACACAATCACACACAGCCCCTCCCCGCCACAGAGACACACCATTACATACACAGACACACACAGACACACAATCACAGATACCCCCTCCCGGCCATAGAGACACACCGTTACACACACATACACAGAAAGACACACACAGCCCCTCCCCGCCACAGAGACACACCATTACATACACAGACACACACACACACACAATCACACACACACCCCCCGCCACAGAGACACACCGTTACATACACAGACATACACACACACACAGACATACACCAGACACGCAAAGACACACAGACACAGATACACAGATACAAAGACACAGACATATAGACACACAGACATGCACAGAGACACATGGAGACACATGCAAAAATGCACAGAGAAAGACATACAGAAGTGTACACACAGACACATAGACCACACAGACACACAGACATGCATGCAAACACACAGACATGCAGACATGCACACAAACACAGACTCACGCACACAGACTTAGGCAGCCCAAATTCAGCGCCTGGGGCATAAGTTCCTGGAGGGGTGGCCACCTTCAGCCCCCACGGTAAGGTCCTGAGGAACCTTCCCCTTAGACAAGGGATCATGGAGGAGGTCTCTTCCGGAGCCTGGAGGGAGGCCTCAAGTGGTCCTTCCACCTCGGCATCCCAAAGTGCTAGGATTATAAGCATGAGCCACTGCACCTGGCCCCAACATCATTTATTGAACAGACTGTCGTTTCCACATTGTGTTTCTTGGCATTTCTGTCAAAAATCAGTTGACCGTAAATGCATGGATTCACTTCCGGGCTCTCTATTCTGTTTCATTGGTCTGTTTGTTTTTATGCCAATACCATGATGTTTTGATTATTATAGCTTTATAGTATATCTTGAAGTTAGGTAGTGTATTGTCTCCAGCTTTGTTCTTTTTGCTTAAGATTGCTTTGGCTATTTAGGGGTCTTTGTGGCCATTACTGACAGTTAAAATGGCCCTGGCTCATGTCTCCTGGGCCTCTACAGTACTTTAGGTGGGGAAGTACTGTGGCCCACATGTCCCAACAGGCTGTGTGTGGCACCTGACAGTGCTTTGTGCCACTGTGGAGCAGGTGTTACTCCCTCATACGAATTTTAGGATTATTTTATTTATTTCAGTGAAAAATGTCAATGAAATTTTGATAGGGATTGCATTGAATCTGTAGATTGTTTGGGGTTGTATGGACATTTTAACAATATTAATTCTTCCAATTCATGAACATGGGATGTCTTTTTTTTGGCACCTGATCTCAGATATGGGACAGCTTTCTAATTATTTGTATCTTCAATTTCTTTCACAAATGTTTTATAGTTTTCAGCATACAGATCTTTCACTTCCTTGGTTGGATTTATTTGCAAGTATTTTTTGTAGCTATTGTAAATGACATTGTTTTCTTGATTTCTTTGTTAGGGTATAGAAATGCTACAGATTGTTGTATGTTAATTTTATATCCTGCAACTTTACTGATTTCATTTATTCTAACATCTTATTGGTGGAATCTTTAGGGTTTTCTATAAGATCATGTCATCTGTAAACAGGGACAATTTAAGTTCTTCCTTTCCAATTTGGATACCTTTTATTTCTTCCTCTTGCCTAATTATTTTGGCTGAGGGCCAACTTGTTGGGTTTGTTGTTGTTGGTTTTTGTCTGTGTCTTTTGGTGTTTCGTGTTGCTGGCTTTTCCAGCACACAGTCACAGATATATGAGGCAGAAAGAAAACCCAGGGAACTCCTGTCATGTCATTCCTCAGGTCCCAAGGTCCCTACATGGTCTGCCTTCTTCTCTCCACCTTTTAGTGTTTGATATACATACGTTTATGTATGTAGTTATATATGTATGTGTAATACCCAGGGAAATATACAGAGATTTTAACTGTCCTTAGTGTAGGGCGTGGGGACAGGTGCATCTATTCTACCTTGCTTGGAAGTGGAAAAATCTTCAAGAAATCAATTTATCACCAACTGGCATGACAGAACTCCTGGTTTAGTGTCTAGCTGTCTCCACTAAAATCAATCACCATGCCATCAGGCACTCTCTTCCCTCTGGTGTGTACTGGTACCTGAAACAGCGTCCAGCACCCTGAGAGCACAGAACGCAGCTTCTTATGTGCCCCACCCAATAATCCCAAATCGAGCACAGACCTGGGAGCTGAAGAGACAAGCTGGAGGTCAGGCAGTTCTATTACTTAAGCCTGGTTCTTCCTGACTCCAAAAGCCAGGCGCCACCCCATGCTCCTTCCCAGCAGAAGCTGGTTTTCACCGGGTCAGGAGGACAGGATGGCTATTCCTGACCGTTGTACAGCAGTGCCACATCTCCTAGTTTCCAGAACATTTAATGTGTTGCTGTGGAGGCCTGGCAGCTCTGAAGTAGCCCCTTGCGCCCAGGACAAACCGGGCCTGGAGGGGTGGGGTGGGGTAAGCTGAAGCTTCCAGTATCCCACGTGGGCATTCTGTTGCTGAGGGCAACCGCCCCTCCCTGCAAGGGAGGGGAAGGAGCAGGCAGGCACACCCTTCCTCCCTCCACATTTCACTGGAGTTGACCTGTGTCCTACTGTGGTTGCACCTGGACCAGCCCAGAGGGACTGGAGTGACTCTTCCCGCAGGTAGGGCACAGCCAGCCTGGGCACAGGGCCTCACTGCAATCCCTGCGCCCCGCCTCCCTGGGGGATTTCCAGGGGTTGTCCTGCTGCTTGGTGAGCTGGGGGTGTGGGGGACCACAGATGAGGCAGGCGCCTAAATTGCTTGGGCGGAGTCCGGCTGCTCTCTCCCTCCAGGCCCTTTCCTGTGTCCTCGGGCCCCTCGGGTCCCTGCACCAGGCCAGCAGCAATCGGGTGTCAGAGGTTCAAGTCCAGGCTGACTCCTGGGACGCACCGACTTTGCCCAGGAGGGCTGGGGAGAGGGCAGCCCCAAAGTGTCATCTTTGATTATTCTTTGTCCCCAAAGCCAGCCTTGGGCATGTGCCCAGCACAGGGAGAGCTGCTGCCTCTGTGGGCTTGAGTCATTTTTGCTTCCTTGCCCCTCTCTGCTCTGTTTGGTTTAAAAAACAAAAACCAACACCCATGGGTGAGGCGAGGCGAGGCGAGGCTTGCCTTGATCCACCCGCTTCCTCCCCTGCAGCCTCGGGCCCCATCCTCCCGCGTGGCCGCACTAGGGGTGCTGGGGGCGGAGTGGGGACCAGACCTGAGTGGGTTCTGGGTTCAGCTTCGCAGCAGGAGCAGCTGGGGCATCATCAGTTGGGCAGGTGACCCAGGATCTGAGCAGGAATCTTCCAGGTGGAGGTGGGGCCGCCCCTCTGCTTGCCACAGCTGCCTTCTGCTCTGGGGGCAGCACTGGCTGAGAATCCAGTGAAGTAAGGCCTTTGAAATGGTTTTGATTGTAAAAGTAATGTTTATGTTTAGCCATTCCTTTTTTTATTTTTTATTTTTTGAGACGGGTCTCCCTCTGTCACCCAGGCTGGAGTGCAGTCGTGAAATGTGGGCTCACTGCAACCTCCACCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGTTGGGATTACAAGTGCCTGCCACCACACCTGACTAAGTTTTGTATTTTTTAGTAGAGATGGAGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCATATCCTCAAGTGATCCACCCTCCTCGTCCTCCCAAAGTGCTGGGATTTTGCCATGAGCCACCACGCTCAGCCATGTTTAGCCATTTTTAAAAGGTGTGAACAGATAATTAAGTCTATTAGCAACATTAGAAAATTTAAGTTAAAATTTAAATGACTCTAGCAAGAATTAGCCTTTAGGTGCCCTGGGTCCCCCTCCTCACCGCCCCCCACCCCGCCGCCTTCTGAGAAGCGTTTTGTAATTTTTCTTATTTATAAAATGGGTTTGATTCAAAACTGACTTTTCCTCTTCACAGTCTCACAGGTCCTTCCCCAGGTCCAAGAGGCTCTTCTGTGTCCTGATGACAAGTAGCTGCCTAGCCGTGGTGGCACCTCCTATCACATGTTAAGGGACCCCTCCCCAGGGCCACACCTGGCAGAAGGTGGCTTATGATGTTCGCAGCTTGAAAGTAGTGTAAACCAAAGATAAAATTCTAAGCCCACTCCCCCAGCCATCGGAATGGACCCCTCCTCTTGGCCAGGGCACTCCAAAGTTAACCTGAAAAACCGGTTCAGGCTGTGAAGAGAAGGTGGAGTGGACATGCCTCATTTATGTCCTCCTCCCTTTTGGAATTCAGCAAAGCTGACCAGCATGAACATTAACACAGACCTTAAGTCTGATTAGTGGCATTTACAATCTATACTCTCTGAAGCGTGCTACCTGGAGTCTTCCTTTGCATGATAAAACTTTGGTCTCCACAACCCCTTATCATAACCTAGACACTCCTTTCTAGTGATAATAACTCTTTCAACCAATTGCCAATAAAAAAATTTTGAATCTACCTATAACCTGGAACCTCCCCGCTCCACCTTCGAGTTGTCCTACCTTTCTGGACAGAAGCAATGTGGATCTTGCATGTATTTGATTGATGTCTCATGTCTCCCTAAAATGTATACAATTAGGCTGTGCCCAGATCACCCTGGGCACATGTTCTCAGGCCCTCCTGAGGTCTCTGTCTCGGGCCATTGGTCACTCAGATTCGGCTCAGAATAAATCTCTTCAAATATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175164:ENST00000453660:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACATCCTCAACGAGCAGTT
R:
GAACTCCATGTCCACGTCCAC
Band lengths:
343-1395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development