MmuINT0009149 @ mm10
Intron Retention
Gene
ENSMUSG00000015787 | Abo
Description
ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase, transferase B, alpha 1-3-galactosyltransferase) [Source:MGI Symbol;Acc:MGI:2135738]
Coordinates
chr2:26842503-26846090:-
Coord C1 exon
chr2:26845956-26846090
Coord A exon
chr2:26843875-26845955
Coord C2 exon
chr2:26842503-26843874
Length
2081 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
3' ss Seq
CCCGTTGTCCTCTCTCACAGGTA
3' ss Score
12.68
Exon sequences
Seq C1 exon
TAGGAAAGATGTTCTTGTCTTGACTCCTTGGCTGGCGCCCATCATCTGGGAGGGGACCTTCAACATCGACATATTGAATGAGCAGTTCAGGATTCGGAATACTACGATTGGACTGACTGTATTTGCTATCAAAAA
Seq A exon
GTAAGCAGTGGGGACTGGAGAGATGGCTAGTGGCTAAAACACTTGCTTGAGGGACATGAAGACATGAGTTTTATCCCTGATACCCATGGAAAAGCTGGGAATGGTGGCATGCGCCTGTAATCTCAACACCGTGGGTAGAGGGGAGAGACATGTGGATCCAGCCCACTTGTTGGACAGTCTAGCTAAACAGTGAGCTTTAGAGTCAATGAAGGGACCCTGTCTGAAGAACAAATAAAATAAATGATAGAAGATACCAAAAATCAACTTCTGGCCTTTACATGCACACAGGCAAGTAAACATGAATATATACAATACACGTGCACACCCCCTCACATATGCACACACAGTGGTCAAGTGGAGGCACAGGCATACCAAGCTGCATGCTTGTATTTAGATTGAATTGAGGGAGGGGCTTGTTCACTCTGCTACCTTCCTGAGCTCTGGTGGGCTCACAAGTGAATGAACCCAGTCCTGCCTTATCCCAGAGCCTCAGGGCAGCTGCCCTTCCAACTGTGCTCTCAGCCAGGTGCCATTTGCATCAGTCATCACTCACTTCACCTTGGTCTCTTCATCCCTAGAGCTGGCAGGAAGGAGCAGGATGCCAGCAGAGCTGTCAGCTGTGGCCACTGATGTGCCCTCAGATGCAGGACAAGGTGGACATCAAGGGTTGAGTGGAACATTTAGCCTTAGCCCTGGGGACAGCAGGTAGTAGTAGACCTGTGAAGCCCTGGGACTCTGGGTCAGGCTGACTTTAGGCCACAGGCAAGAAATGTGCCCTGTGGGAGCCTGTGGGAAGCAGGAAAGGGCAACATTATAGTGTGGAAGGCTGTGAATGCTGAGAGAAGCCATCTGGGCTGCCAGCACATATGAAGAGCATTGTGCCTTCCTGGCTGAGGTCCAAGGATAGTTCTGAGGCCTTTGAACCAAGCAGACTTGAGAGATGTTTGGGGCTTAGTTGGAGGGATCTTAGGCACCTTGAGAATGTCTGCAGCTCCTAGGGACAAAGGACTTTACAGTAAGAAGACACAAACACTACCTTGTTTGGGTGCTGCTGGGTACATCAGCAAGAACCCTGCCAGGTGTGGGTAGCTGCTTTGTCTGTGGAAAGAAGACCTCTGAGGGGACTAGCAGGGAACCCCATGGTCACCTTTATGCAGGGAAAACTGCCACTTGCTTGTTTCTGACATTTAAGTGGGGGCTTTGCACATTTGCCAGGTGATGGGGAGCCCTGTTTCCATGGTGGGGACACATGGCCCTGGGGGTCATCCAGGGAGGGGCAGCCATCTGAATCAGGTAAAATCTTGGACTGGAAGATGACTTAGAACCTGGGTTCTAAGGTTTTTGTCCTTGGACCTGAGGGTTTGTTTTAGGCTTGCCCTTGTTTCTAGGGTGCCTTTTACCCCTGCACCTTGTGAGACCAGTTCTTGTTCTGGGGCAGTTCATGGGGGCTGACTCTTAATAATATACCTGAGTTCCTGTGTGCCTTTTCTCAAGGCACCATAAGTCTTCTGAGGGAGAAGTCTGGGATATAGAGACCCATTGCTTTCTTGAGACAGGGCCCTGCAGCATGCCACAAAGGAGGGGTGCAGGTTCCAGGCCCTTAAGGATCCATTCAGTTCCACTAGGGTTTAAAAGTGGGGTTCTATGAGCAGAGGCTCTGCTCAGGTCAGTGCAAGTGTATGAAGTGTGGAATGTCCTGGGATGAAGCTGTCATTTTTGGAGGGTGTGTGTGACAGACTCATGGAGAGGTGGCCTGCTAGAGTTGCCAAGACAACAGATACCTGTGGCAGATATGCCTGGGACTCCAGTTGAGGAGTCAGCCCTGCCGCCTGGTTGAAAGCTCCCAGGCTTCTGGCTCAGTGTTCCTTGCTAAAATGGGCTGCTGATGTTGCAGCCTTCTGCAGCAAATGAGGGTAAGGTGAGGTACAGCCTTGTAGACTGGTTAGGACAGCAGTCTAACCAGGACAGGGGAGGGATCTAGCCTCCGGGTAGCTATGGTTTCTGCAGCCTGGGCCTATGCCCTGGTAAGTCTTGTTCTAGCTGTGTTAAACCTTTCCATACCCCGTTGTCCTCTCTCACAG
Seq C2 exon
GTATGTGGTGTTCCTTAAGCTGTTCCTTGAGACTGCAGAACAACACTTCATGGTGGGACACAAGGTCATCTACTATGTCTTCACTGACCGTCCAGCTGATGTGCCACAGGTGATCCTGGGTGCAGGACGGCAACTGGTGGTGCTAACTGTGCGCAACTATACTCGATGGCAGGATGTGTCCATGCACAGGATGGAGATGATCAGCCACTTCTCAGAGCGACGCTTTCTACGTGAGGTGGATTACCTGGTGTGTGCAGATGCGGACATGAAGTTCAGTGACCATGTGGGTGTGGAGATTCTCTCAACATTCTTTGGCACTCTGCACCCTGGCTTCTACAGTAGCAGCCGAGAGGCCTTTACCTATGAGCGCCGGCCACAGTCCCAGGCCTACATCCCCTGGGACAGGGGTGACTTTTACTACGGAGGAGCCTTCTTTGGGGGGTCAGTGCTAGAAGTGTACCATCTCACCAAGGCCTGCCATGAAGCTATGATGGAGGACAAGGCCAACGGCATTGAGCCTGTGTGGCATGATGAGAGCTATTTGAACAAATACCTGCTTTACCATAAGCCTACAAAGGTGCTGTCCCCAGAGTATTTGTGGGACCAGCAGCTGCTGGGCTGGCCCTCCATCATGAAGAAGCTGAGATATGTGGCTGTGCCCAAGGACCATCAGGCAATCAGAAACTAATAGCTAAATTCCTATTGGAGAGGACAGGCTGATAGCCAGGTGGCACTCCAGGCTGTGATGAAACTAAAAGGATTTGAGAGCCAATTGTCATCCTCTATCCCACCTCAGAGTCCAGCAGACCCAGTATCACTTGGCTTACCACACACTTTGAGCCCTGGAGTGGCAACCACCTTCAGCTCCACTGTGTGTCCCTAAGCTCCTTTTACTGAGTGACATGGTAGATGGAGCTTTCAGAACATGAAAAAATTCTTGTCATATAGTTATCTGGGGGCATGTGCATCCTCACTCAGGCTTGTCTGGTGCTGGGAGGCTGATGGAGGACCAGGCAGGAGGGCAGGAAGCATCAGCCTGCAGTCCACAGAGGGACATAGTTCACTCGGGGCAGATCAGCACCCTGTGCCCATAACCTCTGCTCATTTTTGGTTTATTTGGGAATATCTAGCTATCCATTCTAGGGAATAAATAAGTTTCTACGTAGTATAGGAAGTTTTTAGTTTCCCCCCTTTTGTTTTGAGGTATTTGGGATTGAACCCAGTGTCTCGTGAATGCTATTCAGGCACGCAGACTATCTTAGAGACACATACTGACTGAACTTGATGTGTGCTACATCTACTATATTTTTATTGATACAGTCTCTAGTAGTTCAAGCTGGTTTCAGCCTTACTATGATGGTCTTATGCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015787:ENSMUST00000102900:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(15.1=100)
A:
NA
C2:
PF034148=Glyco_transf_6=PD(76.3=99.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types