BtaINT0105569 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007550 | OLFM2
Description
Bos taurus olfactomedin 2 (OLFM2), mRNA. [Source:RefSeq mRNA;Acc:NM_001205320]
Coordinates
chr7:15552978-15553845:-
Coord C1 exon
chr7:15553699-15553845
Coord A exon
chr7:15553198-15553698
Coord C2 exon
chr7:15552978-15553197
Length
501 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
AGGTTCCCTCTTGGGGGCAGGAG
3' ss Score
3.34
Exon sequences
Seq C1 exon
GTTCAGAACGTCTCCCAGTCCATGGAGGTTCTTGAGTTGCGGACGTACCGGGACCTCCAGTATGTGCGCAGCATGGAGACCCTCATGCGGAGCCTGGATGCGCGGCTCCGGGCAGCCGACGGGTCCCTCTCGGCCAAGAGCTTCCAG
Seq A exon
GTGTGTCCTTCAGGGTTCAGGTCAGAGGTCAAAGGAAGAACTGGGATTGGTGCCCATTACTTCCCGGAAGGACAGAGGGTTGACTGGGATCTGCGGTCCTAATTGGGCTGAATGTCAAGAGTCAGGTGTGCATCAAAGATAAGGGGTGGGATTGCTGGCACCAACTATGTGGACATGAGCAAACTCCAGGAGATAGTGAAGGACAGGGAAGCCTGGCATACTGCAGTCCATGGGGTTGCAGAGAGTAGGACATGACTGAGCAACTGAACAACAGCAATTGGGGTTGGGTAGGAGGGAGGCTCAAGAGGGAGGGGATATGTGTATACATTTGACTGATTCACTTTGTTGTACAGCAGACACCAACACTACATGGTAAAGTGATTATACTCCCATAAAAATAATACCCCCCCCAAATGAGTGAAGTTGTGGGTTGAAGGTTGGAGCCAGGTCTGGGTCACTGGTTAGGGGTCGGGATCAGCACAGGTTCCCTCTTGGGGGCAG
Seq C2 exon
GAGCTGAAGGACAGGATGACAGAGCTGTTGCCGCTGAGCTCAGTCCTGGAGCAGTACAAGGCGGACACACGGACCATCGTGCGCCTGCGAGAGGAGGTGAGGAATCTGTCCGGCAGCCTTGCCACCATCCAGGAAGAGATGGGCGCCTACGGCTACGAGGACCTGCAGCAGCGGGTGATGGCCCTGGAGGCCCGGCTCCATGCCTGCGCCCAAAAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007550:ENSBTAT00000009935:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=FE(49.0=100)
A:
NA
C2:
PF123083=Noelin-1=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGTTCTTGAGTTGCGGAC
R:
CCAGCTTTTGGGCGCAGG
Band lengths:
344-845
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]