HsaINT0118162 @ hg38
Intron Retention
Gene
ENSG00000105088 | OLFM2
Description
olfactomedin 2 [Source:HGNC Symbol;Acc:HGNC:17189]
Coordinates
chr19:9857263-9857861:-
Coord C1 exon
chr19:9857715-9857861
Coord A exon
chr19:9857483-9857714
Coord C2 exon
chr19:9857263-9857482
Length
232 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
GGTTCCATCTTGATGCACAGGAG
3' ss Score
3.38
Exon sequences
Seq C1 exon
GTCCAGAACGTCTCCCAGTCCATGGAGGTCCTTGAGTTGCGGACGTATCGCGACCTCCAGTATGTACGCGGCATGGAGACCCTCATGCGGAGCCTGGATGCGCGGCTCCGGGCAGCTGATGGGTCCCTCTCGGCCAAGAGCTTCCAG
Seq A exon
GTGGGTCCTCCTGTGTCCAGACCAGAGGTCAAACAAATGACTGGGATTTGGTATCCATTAGTTCCTACAATGGAGTCATGTCTGGGAAGAATCTAGGGTCCAATATGAGCCACATGTCAAGGGCCAGGTGTGCATCAAAGACAAAGGGTGAAGTTATGAGTCAGAGGTTGGAGTCATGTCTGGGTCAAAGGCCAGGGGTCAGGCTTGGCCATGGTTCCATCTTGATGCACAG
Seq C2 exon
GAGCTGAAGGACAGGATGACGGAACTGTTGCCCCTGAGCTCGGTCCTGGAGCAGTACAAGGCAGACACGCGGACCATTGTACGCTTGCGGGAGGAGGTGAGGAATCTCTCCGGCAGTCTGGCGGCCATTCAGGAGGAGATGGGTGCCTACGGGTATGAGGACCTGCAGCAACGGGTGATGGCCCTGGAGGCCCGGCTCCACGCCTGCGCCCAGAAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105088:ENST00000264833:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=PU(95.3=97.6)
A:
NA
C2:
PF123083=Noelin-1=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGAGGTCCTTGAGTTGC
R:
GTTGCTGCAGGTCCTCATACC
Band lengths:
300-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development