GgaINT0126456 @ galGal4
Intron Retention
Gene
ENSGALG00000002515 | OLFM1
Description
Noelin [Source:UniProtKB/Swiss-Prot;Acc:Q9IAK4]
Coordinates
chr17:7616481-7619084:+
Coord C1 exon
chr17:7616481-7616636
Coord A exon
chr17:7616637-7618864
Coord C2 exon
chr17:7618865-7619084
Length
2228 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
AGCTTATTTTAACCTTGCAGGCA
3' ss Score
7.74
Exon sequences
Seq C1 exon
GTGCAAAACATGTCTCAGTCAATAGAGGTGTTGGACAGGCGGACCCAGCGAGACCTACAGTACGTGGAGAAGATGGAAAACCAGATGAGAGGACTGGAATCCAAATTTAAGCAAGTGGAAGAAAGCCACAAGCAGCACCTGGCGAGGCAGTTTAAG
Seq A exon
GTAGGTCTGCTTTCCAACCTGCTAACGGAGGCGTAGCGCGGCGCGGTGTCCCAGCCTGGCAGCCCCCTGCTATGCTGCAGCCCAGCTGCAGTCTGTGCTCACAGCACTCCTCAGCTCCCTCCTATCCAAAGCACGGCCAGAGAGCATTTTCCTATAGGGTAAAAGCCTGAATCTCTGCATTCCCATGCTGGCAGGGTTGGCTCCATGTTAGAAGACTCTGGGCAGGATGAGAGCAGGCAGAGCTAGGAACTCTCCCACCCCCATCCCTACTCCTGTTCTCCTTAGGAAGAACCAAAGGGTTTGCAATAGCCAGGATCTGGGCCTTAGCAAGCAGTTCTGCAGCACACAGGAACCCACACCAGGCTCTCAGCGCATCACTGCCCTCCTTGGTGTGGGTTGCATCCATCGGGCAATCAGCCAAGCTCACAAACCCCACCAAAAATAATTTACAGAAGGAATTTACAGCTCTTTGGCTGTCCTGAGGATGGTCCAGTTTGGAAGTGAGAGTGTTGGCAGCGCCCTGCAGTGAGTGATGTGTGCAGATTAGGAGTGGAAAAATCATCCCTCTCAATGATGCTGCCACTGCAGCAAACTTTTAGTCACATGATAGAGACCAAGTGGAATTGCCAGAAGGAGGCTGGCAGTAACGTTTGTCATGCCAAATTGTAGTAATATTTTGGATTCATCATAAACACAAATGGTGCAGATTTCTACTGGAATCCAGGGATGCTTCCCACCAGCTGATTCCCATCCTCTTGCCCAGGCTGACCTGTCTGTTAAGCCAGCTATTTCTTAATGAGTACATTAAATACCGAGATGACACAATAAAAGCTGGGAAGAAGGCTCTCATAACTTCCCACCAGCCCCAACTCCTGCCCTCCCCATCTGCAGGACCCCCTGCCTGGCCTGCCTGCCAGGCTCATCCTTCAGAGTTAAACATGAGATCCTTGCTCTTTTTCCCTATCCATTCTGATGAGTTTGGCCCTCCCCTCCCCGTTGTCTGCCAGGGAATTTGCAGCAGTTATCAAAGTAAATAGGAAATTAAGGATATCCCCCACGTGCAGAGTGCAGGAGGGAAAGCCTCTTGGCTTAAATAGGAGGGGATGGGATGCAAAGAAATGAAGCTGAGGGACAACTTCTGGTCCCCCTCACCCCCAGAGCTGCTTCAGCAGCCAGGCAGAGTCCGAGCCCTGCTCTGGATGGGGTCAGGGCAGGAGCACCAGGTGTATGCTGTATGCTGCCATGCTTCATTAACGGGTAGGTGCATGCCTATTTATGTCTGCTCATTAGCTGCTGGAGCAAAGCATCTTCAACAAAATGCTGCATACTGTGCCTTTAAACCAGGCCTCCATTTGATTCAAAGGCCAAAATACAGAGACAAGTCTTAATTCCTGCAAAATAAACCTGATAACGACTCGGATTTTTATGCTTTTCATGGCGAGTCTGAAAACGGTCAGGAGCTTTTGTCTCATTTGCTGCCAAAGCATCACTTGAAATAACAGCACAGCATTTTGTTTCTGCTAATGCCAGTGTTGAGATGTGAGTGGTTTGGAGATCTTGTGTTCTTTCTCTTTAGTTCCGTATTGTCTATGAATGGCTATCTATATAAGGCAGGTTAGCGAGCTAGATCCTCAACAGTATTTCATTTTCTTGCTTACAGGGCTAACTTAAAAGCAAGTTTTTTCAATGCTGCAGTGACTGAAGAAGCAGTTCACTCCCATGTAACCATGAAAAGAGGGCCACAGAGCATTTTGCACCATGCATTTATTTATTTTGATTACTTTCCAAATTAGCACCATATCTCACTAAGGAACCTTGAACCACACAACCGAGATCTTCCTTTGCATGCAATTGTAGATGCATCTCATGAATAGTTTGAAACCCTTGTCAATGCATATATATATTTATTTTATTTTATTTTATTTTTGGAAAGAAAAAAAAAAAAAAAGAACTCTTTGTGTATGTGATCTGAAGCATGTAACCCTAAGATGTTGCATTCTAAAAATGACAAATAAAGGCCTTTCCCAAATATTTTGGTGTTCTGCAGCCTGTTTAATATGTTCTTTCCGATAACGTCATTCGGACCAAAATAATGATTAAAGTAATTTTAATGATAATAGTTGTGGGGATATGAACGATGCACTCACATAGGGAGCAACCAGGTCAAGGCAGAGTGTTGCAGATTTTTGCACGCATAGCACTGAATCGAGCTTATTTTAACCTTGCAG
Seq C2 exon
GCAATAAAAGCGAAAATGGAGGAACTTAGGCCTTTGATACCAGTGTTGGAAGAGTACAAAGCCGATGCCAAATTGGTATTGCAGTTTAAAGAGGAGGTCCAGAATCTGACGTCAGTTCTAAACGAACTCCAGGAAGAGATTGGCGCCTATGACTACGAAGAGCTTCAGAACAGAGTGTCAAATCTTGAAGAAAGGCTTCGTGCATGCATGCAAAAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002515:ENSGALT00000003964:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=FE(50.5=100),PF0154011=Lipoprotein_7=FE(32.9=100),PF101864=Atg14=FE(29.3=100),PF045827=Reo_sigmaC=FE(32.1=100),PF131661=AAA_13=FE(32.9=100),PF045137=Baculo_PEP_C=PU(38.9=98.1),PF138741=Nup54=PU(39.5=94.2)
A:
NA
C2:
PF123083=Noelin-1=PD(0.1=0.0),PF0154011=Lipoprotein_7=FE(47.1=100),PF101864=Atg14=FE(42.0=100),PF045827=Reo_sigmaC=FE(45.9=100),PF131661=AAA_13=FE(47.1=100),PF045137=Baculo_PEP_C=FE(55.7=100),PF138741=Nup54=FE(58.9=100),PF045087=Pox_A_type_inc=WD(100=28.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]