HsaINT0118157 @ hg19

Intron Retention

Gene

ENSG00000130558 | OLFM1

Description

olfactomedin 1 [Source:HGNC Symbol;Acc:17187]

Coordinates

chr9:137987710-137990351:+

Coord C1 exon

chr9:137987710-137987865

Coord A exon

chr9:137987866-137990131

Coord C2 exon

chr9:137990132-137990351

Length

2266 bp

Sequences

Splice sites

5' ss Seq

AAGGTATGC

5' ss Score

9.55

3' ss Seq

AGCTTATTTTAACCTTGCAGGCG

3' ss Score

7.71

Exon sequences

Seq C1 exon

GTGCAGAACATGTCTCAATCCATAGAGGTCTTGGACAGGCGGACCCAGAGAGACTTGCAGTACGTGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTCCAAGTTCAAACAGGTGGAGGAGAGTCATAAGCAACACCTGGCCAGGCAGTTTAAG

Seq A exon

GTATGCATGTTCCTCCCCCTCTCCCTCCCCTTATCCTCCTCCTCCTCCTCTTCCTCCTCCTTCCCCTCCCTCCTCTCCTCCTTCTCTTCTTCCTCCTCCTCTTCTCCTCCTCTTGCTCCTCCTCCCTTCATCCTCCTCTTCCTCCTCCCTCTCCTTCTTCTCCTCCTCTTCCTCCTCCTCCCCCTCTTCATCCTCCTCTTCCTCCTCCCTCTCCTTCTTCTCCTCCTCTTCCTCCTCCCTCTCCTTCTTCTCCTCCTCTTCCCCCTCATCCTCTTCATCCTCCTTTTCCTCCTCCCTCTCCTTCTTCTCCTCCTCTTCCTCCTCCCTCTCCTTCTTCTCCTCCTCTGAGGCTGGGTGTGCTTTCCCTTCATGCTCTCCCTTTCCCTACAGAAATGGTCATTTGGGGCAGGGAGAAGCATAGCAAAGGTTGTTCTGTGCCTTGAAAGGACTGTTGCCCTTGGCAGTAGGGAGGCCACCACTGGCCCTGGCTTGGCAGAAGCCACCTTGACAGGGGCGGCCTGAGTGGTGGCAGCAGCATACACTCGCCCCCAAGCCCCCGTCAGTGTGGTTTGGAAGCCAGGGGTCTGAGATCCTGCGCTGCCCGAGCCAAGTCGAATATTAGCTGGGAAGGGACATCGTTATTGGCCCTTGTCATTCTGCAGCTGCTGCAGGTAAATCACATTAGCCAAAGATTAGCTGAATTGATGAGGGCCATTCTGGAGCAGGAATCTCTCAGGGCAGTTTTCACATCTGACCTAATCTAGCCATGACAAAGCATACCATAGACTTGCAGGGAAAAAAGAGAGAGATGCCAGCCTCCTTTCCACCTCGTGGGAAGTGTTCTGCTTCTCCGGGTAACTCTGGACATTAAAACTGGTGTTTGTTTGACCTAAAATCATAGATACAGATGTGCAGCCAGGTAGAGAGATGCCCACAGTTGACTCCATCTCAGTGCGATTCGACTGAAACGTTATATGCCGCCTTAATGAAGGTATACATGCATTTTAATTAGAAATCCAGCCCAGATGTAAATGAACAGGTCAAATTACACAGCCTCGCCCGACTAGAAACTGCTGGTGTACTCTGTCTCTGTCTTCCCGTCCTTTTTATGCTAATGTTTTTCTTCGATGTGCTCCCTGCATGAGGCAAGAACTAATTCTCTTTTAAAAATGATACATTAAATAGATGAAATGGCAAGCTAATGAAATTATAAATCTATATTATAAATAAAATAATAGCAGGCCCAATCCTGTTGAGGTGAAATGAGCCGATTGTGCTCATCAGAGGCAGTTGGACATTTTTGTCCTCGCATCTGGCTGGTCATCATGAATTACTCTGGAGGGAGAGATGTTGACCTGTCTAACCAAAAAAGCATTTATGTCTCTGAGCCAGCACTCCCTTCTCTGCGGCCAGCAGACTCCTCTAACGAGGGGGGTGTCTTCAGCAACTGGGAGGTAGCTCATCTTGGCAAACGTTGTTGACACAGGCATCTCTCCGAGTTTCCAATTTTGGGGTGCTGTGGCTCTGGGGGAAGAAAAGCAAGCGCTTGCCTATACTGTGCTAAACCGCATTAAAAAAATTCCAACAGAAATTGTGACGAGGGAATCTCAATAACTCTTAAAGCAGTTTGTTTTGACTAACTCGAGCATTACAGTGGGATTTTTCTAACTGACCATGCAAATATGTGTTTCCTGATGGCTGTCTGTTTCAGGCAGGCTAGTGAGCTAGTTCTTCAACGGTATTTCATTTTCTTACTTGCAGGGCTAACTTAAAAGAGTTTTTTCAATGCTGCAGTGACTGAAGAAGCAGTCCACTCCCATGTAACCATGAAAGAGAGCCAGAGAGCTTTTTGCACCATGCATTTTTACTATTATTTTCCAATACTTAGCACCATTTCACTAAGGAACCTTGAATACAACCAGGATCCTCCTTTGCATGCGACTGTAGCTGCATTTCATGAATAGTTTGAACCCTTGTCAATGCATTTTTTGAAAAAGAAAGAAAAAAAAAACTTCGTGTATGTGACTCAAAGCATGTAACCTTAAGATGTTGCATTCTAAACTGACAATAAAGACCTTTCCCAAATATGCTGGTGTTCTGAGGACTGTTTAATATGCTCTTCTAACTCATTTGGACCAGAACAAATAAGCCTGTAAATAAAGCGGGAATATACACACTTTCCCTCACCTAGGGAGAAGCCAGGCCAAGGCAGGGTGTGAGAGTTCTTGCATGCATCGCACTGAACCAGCTTATTTTAACCTTGCAG

Seq C2 exon

GCGATAAAAGCGAAAATGGATGAACTTAGGCCTTTGATACCTGTGTTGGAAGAGTACAAGGCCGATGCCAAATTGGTATTGCAGTTTAAAGAGGAGGTCCAGAATCTGACGTCAGTGCTTAACGAGCTGCAAGAGGAAATTGGCGCCTATGACTACGATGAACTTCAGAGCAGAGTGTCCAATCTTGAAGAAAGGCTCCGTGCATGCATGCAAAAACTAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000130558-OLFM1:NM_014279:3

Average complexity

IR-C

Mappability confidence:

NA

Protein Impact

No protein impact description available

No structure available

Features

Disorder rate (Iupred):

C1=0.266 A=NA C2=0.000

Domain overlap (PFAM):

C1:

PF123083=Noelin-1=FE(72.9=100),PF101864=Atg14=FE(40.2=100),PF0154011=Lipoprotein_7=FE(42.9=100),PF100464=BLOC1_2=PD(72.7=76.9),PF0149614=V_ATPase_I=FE(41.1=100),PF041569=IncA=FE(40.5=100),PF131661=AAA_13=FE(40.2=100),PF045827=Reo_sigmaC=FE(39.8=100),PF060097=Laminin_II=FE(62.2=100),PF138741=Nup54=PU(44.5=94.2),PF055317=NPV_P10=PU(48.0=92.3),PF045137=Baculo_PEP_C=PU(44.5=94.2),PF0080420=Syntaxin=PU(38.8=73.1),PF100464=BLOC1_2=PU(58.1=69.2),PF078897=DUF1664=PU(38.2=65.4),PF093215=DUF1978=PU(32.1=51.9)

A:

NA

C2:

PF123083=Noelin-1=PD(0.1=0.0),PF101864=Atg14=PD(44.9=93.4),PF0154011=Lipoprotein_7=PD(42.9=83.6),PF0149614=V_ATPase_I=PD(45.2=91.8),PF041569=IncA=PD(45.2=93.4),PF131661=AAA_13=PD(46.5=96.7),PF045827=Reo_sigmaC=PD(46.1=96.7),PF060097=Laminin_II=PD(18.3=24.6),PF138741=Nup54=PD(53.6=96.7),PF055317=NPV_P10=PD(50.0=82.0),PF045137=Baculo_PEP_C=PD(53.6=96.7),PF0080420=Syntaxin=PD(59.2=95.1),PF100464=BLOC1_2=PD(38.7=39.3),PF078897=DUF1664=PD(59.6=86.9),PF093215=DUF1978=PD(65.5=90.2)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSP00000360858