MmuINT0113072 @ mm9

Intron Retention

Gene

ENSMUSG00000026833 | Olfm1

Description

olfactomedin 1 [Source:MGI Symbol;Acc:MGI:1860437]

Coordinates

chr2:28068052-28070348:+

Coord C1 exon

chr2:28068052-28068207

Coord A exon

chr2:28068208-28070128

Coord C2 exon

chr2:28070129-28070348

Length

1921 bp

Sequences

Splice sites

5' ss Seq

AAGGTACGA

5' ss Score

9.78

3' ss Seq

AGCTTATTTTAACCTTGCAGGCA

3' ss Score

7.74

Exon sequences

Seq C1 exon

GTGCAAAACATGTCTCAATCCATAGAAGTCTTGGACAGGCGAACTCAGAGAGACCTGCAGTACGTGGAGAAGATGGAGAACCAGATGAAAGGCCTGGAGACCAAGTTCAAGCAGGTGGAGGAGAGCCATAAGCAGCATCTAGCCAGGCAGTTCAAG

Seq A exon

GTACGAGGCCCCTCGAGATTCTCCTCTTCCTCCCTCCCCTTCTCCCTCTCCCTTCTCCTCCTCTCCCCTTCTCTCTCCCTCCCTACTTCCTCCTCCTCCAAGTCAGAGGACTTTCTTTTCCCTTCTCACTTCCCTTTCCCCACAGAGGTAGTGCTCAGGGGCCTGGGGATTGTTCATCCAGCAAGGATTGTTCTCTGTCTTGTAAAGCCGTGCCCCTCTGGGAGCAGAGAGGCCACCCACTCCAGCCACCGAAGGGGGTAGGGCTTGGTCACACCCTGGCCCCTCTCTCCCTCCTCATCAGCCAGTAGGAAACAGGGGTCCCAAGCCTCCTGCTCCTCTAACTGAGGCATGTTAGCTGGGCAGCATCATTAGAGGCCCTGGGCATTCCACAGCTGCTGTAGGTAAATCACATTAGCCAGGGATTAGCTTAATTGATTAGAGCCATTTCTGGGCCCTGATCACTCAGGGCAGTTTTTCACTTCTGACCTAATTTTAGCTGTGACAAGGCACACTGTAGACGCAGCTGCATTAAGTGTTCTGCGTCTCCGTGTTACCCTGGCCGTTAAAAGCTCACTTCCTTTGACCTGAAATTATATATATACATATGTACAAGTATGTATATATACACGACTCTCCACTAGGACTGGGCTGGAAATTATCTGCCACCTTAATTAAGGTGTTCATGCATGTTAATTAGGAATCAGGCCCAGATGTAAATGAACAGGTCAAATTACAGGGCCGCTTGGCTGGAAACTGCTAAGTGTGGCTAGGTCCTCCCTTCCTCTCATGCTAATGTTATCCTTTGATGCACTCCCTGCGAGAAGCAGGAACTACTACTCCTTTTTAACGCGGTACATTAGGTAGGCAAAATGGCAAGCTAATGAAGTTATAAATCTGCGTTATAAATAAAATAATAGCAGGCGGATCCCACTGAAGCAAAATAAGCGTCGATTCTTGTCCCAGGCAGGGAAAGGCTGTGCCTGCCCCTTTGCCATCATGACTTTACCTTGGCAAGAGATTTTGACCTTACAGACCAAAAAGAGTTTGTTTCTGTCCTGGCCAGCATCTGTCCTCCTGTGCTCGGCAGACTGTGAAGACAGAAGTGTCTTCAGTGACATGAGGTAGCTCCCCTTGGAGAGAGTCATCTACACGGCACCCTCTGAGATCCAAAGTTGGGGTCTCTGAGACTTTGGGACAGCAAAAGCAAGCCCTTGCCTTTTACGCTATAGTCACTGCATGAAGGTATCTTAGCAGAAACCTTGAGGGATCCCCATCACCATCTGAGTAACTTGTTTTACTATGATTAAAGTGTGATTTTTCTTAAGTGACCGTGCAAATATATGTCTTTTAATGGCTGTTTGAGGCAGGCTAGTGAGCTAGCTTTTCAACGGTGTTTCATTTTCTTGCTTGCAGGGCTAACTTAAAGAGTTTTTTCAATGCGCCAGTGACTGAAGAAGCAGTCCCCCATGTAACCATGAGAGAGCCAGAGAGCTTTTTGCACCATGCATTTTTACGATTCTTTTCCAGTCCTTAGCGCCATTTCACTAAGGAGCCTTGAATCCAGCCAGGATCCTCCTTTTGCATGCGACTCTAGATGCATCCCATGAATAGTTTGAACCCTTGTCAATGCACTTTTTGAAAAAGAAAGAAAAAAAAAACCCACAAACTTTGTGTATGTGACCTAAAGCATGTAACTTTAAGATGCTGCATTCTCAACTGACAAATAAAGGCCTTTCCCAAATATTGTGGTGTTCTGAGGACTGTTTAATACGCTCTCCTGACTCACTGGGACCCGATAACTGACGGATTGCTAAAACGGGACTGTGCACACCTTCCCTCTCGTAGGGAGAAGCCAGGCCAAGGCAGGGTATTTCAAGTTTTTGCATGCATCGCACTGAACCAGCTTATTTTAACCTTGCAG

Seq C2 exon

GCAATAAAAGCGAAAATGGATGAACTTAGGCCTTTGATTCCTGTGTTGGAAGAGTACAAGGCCGATGCCAAATTGGTATTGCAGTTTAAGGAGGAGGTCCAGAATCTGACGTCAGTGCTTAACGAACTGCAAGAGGAGATTGGCGCCTATGACTACGATGAACTTCAGAGCAGAGTGTCCAATCTTGAAGAAAGGCTCCGTGCATGCATGCAAAAACTAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000026833-Olfm1:NM_019498:3

Average complexity

IR-C

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.250 A=NA C2=0.000

Domain overlap (PFAM):

C1:

PF123083=Noelin-1=FE(50.5=100),PF101864=Atg14=FE(29.1=100),PF0154011=Lipoprotein_7=FE(34.7=100),PF045827=Reo_sigmaC=FE(31.3=100),PF138741=Nup54=PU(41.5=94.2),PF045137=Baculo_PEP_C=PU(39.7=96.2)

A:

NA

C2:

PF123083=Noelin-1=PD(0.1=0.0),PF101864=Atg14=FE(41.7=100),PF0154011=Lipoprotein_7=PD(45.9=90.5),PF045827=Reo_sigmaC=FE(44.8=100),PF138741=Nup54=PD(56.9=89.2),PF045137=Baculo_PEP_C=PD(50.4=93.2),PF045087=Pox_A_type_inc=WD(100=28.4)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSMUSP00000028177