GgaINT0126456 @ galGal3

Intron Retention

Gene

ENSGALG00000002515 | NOE1_CHICK

Description

NA

Coordinates

chr17:8298180-8300783:+

Coord C1 exon

chr17:8298180-8298335

Coord A exon

chr17:8298336-8300563

Coord C2 exon

chr17:8300564-8300783

Length

2228 bp

Sequences

Splice sites

5' ss Seq

AAGGTAGGT

5' ss Score

10.29

3' ss Seq

AGCTTATTTTAACCTTGCAGGCA

3' ss Score

7.74

Exon sequences

Seq C1 exon

GTGCAAAACATGTCTCAGTCAATAGAGGTGTTGGACAGGCGGACCCAGCGAGACCTACAGTACGTGGAGAAGATGGAAAACCAGATGAGAGGACTGGAATCCAAATTTAAGCAAGTGGAAGAAAGCCACAAGCAGCACCTGGCGAGGCAGTTTAAG

Seq A exon

GTAGGTCTGCTTTCCAACCTGCTAACGGAGGCGTAGCGCGGCGCGGTGTCCCAGCCTGGCAGCCCCCTGCTATGCTGCAGCCCAGCTGCAGTCTGTGCTCACAGCACTCCTCAGCTCCCTCCTATCCAAAGCACGGCCAGAGAGCATTTTCCTATAGGGTAAAAGCCTGAATCTCTGCATTCCCATGCTGGCAGGGTTGGCTCCATGTTAGAAGACTCTGGGCAGGATGAGAGCAGGCAGAGCTAGGAACTCTCCCACCCCCATCCCTACTCCTGTTCTCCTTAGGAAGAACCAAAGGGTTTGCAATAGCCAGGATCTGGGCCTTAGCAAGCAGTTCTGCAGCACACAGGAACCCACACCAGGCTCTCAGCGCATCACTGCCCTCCTTGGTGTGGGTTGCATCCATCGGGCAATCAGCCAAGCTCACAAACCCCACCAAAAATAATTTACAGAAGGAATTTACAGCTCTTTGGCTGTCCTGAGGATGGTCCAGTTTGGAAGTGAGAGTGTTGGCAGCGCCCTGCAGTGAGTGATGTGTGCAGATTAGGAGTGGAAAAATCATCCCTCTCAATGATGCTGCCACTGCAGCAAACTTTTAGTCACATGATAGAGACCAAGTGGAATTGCCAGAAGGAGGCTGGCAGTAACGTTTGTCATGCCAAATTGTAGTAATATTTTGGATTCATCATAAACACAAATGGTGCAGATTTCTACTGGAATCCAGGGATGCTTCCCACCAGCTGATTCCCATCCTCTTGCCCAGGCTGACCTGTCTGTTAAGCCAGCTATTTCTTAATGAGTACATTAAATACCGAGATGACACAATAAAAGCTGGGAAGAAGGCTCTCATAACTTCCCACCAGCCCCAACTCCTGCCCTCCCCATCTGCAGGACCCCCTGCCTGGCCTGCCTGCCAGGCTCATCCTTCAGAGTTAAACATGAGATCCTTGCTCTTTTTCCCTATCCATTCTGATGAGTTTGGCCCTCCCCTCCCCGTTGTCTGCCAGGGAATTTGCAGCAGTTATCAAAGTAAATAGGAAATTAAGGATATCCCCCACGTGCAGAGTGCAGGAGGGAAAGCCTCTTGGCTTAAATAGGAGGGGATGGGATGCAAAGAAATGAAGCTGAGGGACAACTTCTGGTCCCCCTCACCCCCAGAGCTGCTTCAGCAGCCAGGCAGAGTCCGAGCCCTGCTCTGGATGGGGTCAGGGCAGGAGCACCAGGTGTATGCTGTATGCTGCCATGCTTCATTAACGGGTAGGTGCATGCCTATTTATGTCTGCTCATTAGCTGCTGGAGCAAAGCATCTTCAACAAAATGCTGCATACTGTGCCTTTAAACCAGGCCTCCATTTGATTCAAAGGCCAAAATACAGAGACAAGTCTTAATTCCTGCAAAATAAACCTGATAACGACTCGGATTTTTATGCTTTTCATGGCGAGTCTGAAAACGGTCAGGAGCTTTTGTCTCATTTGCTGCCAAAGCATCACTTGAAATAACAGCACAGCATTTTGTTTCTGCTAATGCCAGTGTTGAGATGTGAGTGGTTTGGAGATCTTGTGTTCTTTCTCTTTAGTTCCGTATTGTCTATGAATGGCTATCTATATAAGGCAGGTTAGCGAGCTAGATCCTCAACAGTATTTCATTTTCTTGCTTACAGGGCTAACTTAAAAGCAAGTTTTTTCAATGCTGCAGTGACTGAAGAAGCAGTTCACTCCCATGTAACCATGAAAAGAGGGCCACAGAGCATTTTGCACCATGCATTTATTTATTTTGATTACTTTCCAAATTAGCACCATATCTCACTAAGGAACCTTGAACCACACAACCGAGATCTTCCTTTGCATGCAATTGTAGATGCATCTCATGAATAGTTTGAAACCCTTGTCAATGCATATATATATTTATTTTATTTTATTTTATTTTTGGAAAGAAAAAAAAAAAAAAAGAACTCTTTGTGTATGTGATCTGAAGCATGTAACCCTAAGATGTTGCATTCTAAAAATGACAAATAAAGGCCTTTCCCAAATATTTTGGTGTTCTGCAGCCTGTTTAATATGTTCTTTCCGATAACGTCATTCGGACCAAAATAATGATTAAAGTAATTTTAATGATAATAGTTGTGGGGATATGAACGATGCACTCACATAGGGAGCAACCAGGTCAAGGCAGAGTGTTGCAGATTTTTGCACGCATAGCACTGAATCGAGCTTATTTTAACCTTGCAG

Seq C2 exon

GCAATAAAAGCGAAAATGGAGGAACTTAGGCCTTTGATACCAGTGTTGGAAGAGTACAAAGCCGATGCCAAATTGGTATTGCAGTTTAAAGAGGAGGTCCAGAATCTGACGTCAGTTCTAAACGAACTCCAGGAAGAGATTGGCGCCTATGACTACGAAGAGCTTCAGAACAGAGTGTCAAATCTTGAAGAAAGGCTTCGTGCATGCATGCAAAAATTAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSGALG00000002515:ENSGALT00000003964:3

Average complexity

IR

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.154 A=NA C2=0.000

Domain overlap (PFAM):

C1:

PF123083=Noelin-1=FE(50.5=100),PF101864=Atg14=FE(29.1=100),PF0154011=Lipoprotein_7=FE(33.6=100),PF041569=IncA=FE(33.3=100),PF131661=AAA_13=FE(34.5=100),PF045827=Reo_sigmaC=FE(32.7=100),PF138741=Nup54=PU(41.9=94.2),PF045137=Baculo_PEP_C=PU(32.7=71.2)

A:

NA

C2:

PF123083=Noelin-1=PD(0.1=0.0),PF101864=Atg14=FE(41.7=100),PF0154011=Lipoprotein_7=PD(47.4=97.3),PF041569=IncA=PD(47.1=97.3),PF131661=AAA_13=FE(49.3=100),PF045827=Reo_sigmaC=FE(46.8=100),PF138741=Nup54=PD(56.4=89.2),PF045137=Baculo_PEP_C=FE(64.6=100),PF045087=Pox_A_type_inc=WD(100=28.4)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSGALP00000003955