HsaINT1025616 @ hg38
Intron Retention
Gene
ENSG00000130558 | OLFM1
Description
olfactomedin 1 [Source:HGNC Symbol;Acc:HGNC:17187]
Coordinates
chr9:135095864-135098505:+
Coord C1 exon
chr9:135095864-135096019
Coord A exon
chr9:135096020-135098285
Coord C2 exon
chr9:135098286-135098505
Length
2266 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGC
5' ss Score
9.55
3' ss Seq
AGCTTATTTTAACCTTGCAGGCG
3' ss Score
7.71
Exon sequences
Seq C1 exon
GTGCAGAACATGTCTCAATCCATAGAGGTCTTGGACAGGCGGACCCAGAGAGACTTGCAGTACGTGGAGAAGATGGAGAACCAAATGAAAGGACTGGAGTCCAAGTTCAAACAGGTGGAGGAGAGTCATAAGCAACACCTGGCCAGGCAGTTTAAG
Seq A exon
GTATGCATGTTCCTCCCCCTCTCCCTCCCCTTATCCTCCTCCTCCTCCTCTTCCTCCTCCTTCCCCTCCCTCCTCTCCTCCTTCTCTTCTTCCTCCTCCTCTTCTCCTCCTCTTGCTCCTCCTCCCTTCATCCTCCTCTTCCTCCTCCCTCTCCTTCTTCTCCTCCTCTTCCTCCTCCTCCCCCTCTTCATCCTCCTCTTCCTCCTCCCTCTCCTTCTTCTCCTCCTCTTCCTCCTCCCTCTCCTTCTTCTCCTCCTCTTCCCCCTCATCCTCTTCATCCTCCTTTTCCTCCTCCCTCTCCTTCTTCTCCTCCTCTTCCTCCTCCCTCTCCTTCTTCTCCTCCTCTGAGGCTGGGTGTGCTTTCCCTTCATGCTCTCCCTTTCCCTACAGAAATGGTCATTTGGGGCAGGGAGAAGCATAGCAAAGGTTGTTCTGTGCCTTGAAAGGACTGTTGCCCTTGGCAGTAGGGAGGCCACCACTGGCCCTGGCTTGGCAGAAGCCACCTTGACAGGGGCGGCCTGAGTGGTGGCAGCAGCATACACTCGCCCCCAAGCCCCCGTCAGTGTGGTTTGGAAGCCAGGGGTCTGAGATCCTGCGCTGCCCGAGCCAAGTCGAATATTAGCTGGGAAGGGACATCGTTATTGGCCCTTGTCATTCTGCAGCTGCTGCAGGTAAATCACATTAGCCAAAGATTAGCTGAATTGATGAGGGCCATTCTGGAGCAGGAATCTCTCAGGGCAGTTTTCACATCTGACCTAATCTAGCCATGACAAAGCATACCATAGACTTGCAGGGAAAAAAGAGAGAGATGCCAGCCTCCTTTCCACCTCGTGGGAAGTGTTCTGCTTCTCCGGGTAACTCTGGACATTAAAACTGGTGTTTGTTTGACCTAAAATCATAGATACAGATGTGCAGCCAGGTAGAGAGATGCCCACAGTTGACTCCATCTCAGTGCGATTCGACTGAAACGTTATATGCCGCCTTAATGAAGGTATACATGCATTTTAATTAGAAATCCAGCCCAGATGTAAATGAACAGGTCAAATTACACAGCCTCGCCCGACTAGAAACTGCTGGTGTACTCTGTCTCTGTCTTCCCGTCCTTTTTATGCTAATGTTTTTCTTCGATGTGCTCCCTGCATGAGGCAAGAACTAATTCTCTTTTAAAAATGATACATTAAATAGATGAAATGGCAAGCTAATGAAATTATAAATCTATATTATAAATAAAATAATAGCAGGCCCAATCCTGTTGAGGTGAAATGAGCCGATTGTGCTCATCAGAGGCAGTTGGACATTTTTGTCCTCGCATCTGGCTGGTCATCATGAATTACTCTGGAGGGAGAGATGTTGACCTGTCTAACCAAAAAAGCATTTATGTCTCTGAGCCAGCACTCCCTTCTCTGCGGCCAGCAGACTCCTCTAACGAGGGGGGTGTCTTCAGCAACTGGGAGGTAGCTCATCTTGGCAAACGTTGTTGACACAGGCATCTCTCCGAGTTTCCAATTTTGGGGTGCTGTGGCTCTGGGGGAAGAAAAGCAAGCGCTTGCCTATACTGTGCTAAACCGCATTAAAAAAATTCCAACAGAAATTGTGACGAGGGAATCTCAATAACTCTTAAAGCAGTTTGTTTTGACTAACTCGAGCATTACAGTGGGATTTTTCTAACTGACCATGCAAATATGTGTTTCCTGATGGCTGTCTGTTTCAGGCAGGCTAGTGAGCTAGTTCTTCAACGGTATTTCATTTTCTTACTTGCAGGGCTAACTTAAAAGAGTTTTTTCAATGCTGCAGTGACTGAAGAAGCAGTCCACTCCCATGTAACCATGAAAGAGAGCCAGAGAGCTTTTTGCACCATGCATTTTTACTATTATTTTCCAATACTTAGCACCATTTCACTAAGGAACCTTGAATACAACCAGGATCCTCCTTTGCATGCGACTGTAGCTGCATTTCATGAATAGTTTGAACCCTTGTCAATGCATTTTTTGAAAAAGAAAGAAAAAAAAAACTTCGTGTATGTGACTCAAAGCATGTAACCTTAAGATGTTGCATTCTAAACTGACAATAAAGACCTTTCCCAAATATGCTGGTGTTCTGAGGACTGTTTAATATGCTCTTCTAACTCATTTGGACCAGAACAAATAAGCCTGTAAATAAAGCGGGAATATACACACTTTCCCTCACCTAGGGAGAAGCCAGGCCAAGGCAGGGTGTGAGAGTTCTTGCATGCATCGCACTGAACCAGCTTATTTTAACCTTGCAG
Seq C2 exon
GCGATAAAAGCGAAAATGGATGAACTTAGGCCTTTGATACCTGTGTTGGAAGAGTACAAGGCCGATGCCAAATTGGTATTGCAGTTTAAAGAGGAGGTCCAGAATCTGACGTCAGTGCTTAACGAGCTGCAAGAGGAAATTGGCGCCTATGACTACGATGAACTTCAGAGCAGAGTGTCCAATCTTGAAGAAAGGCTCCGTGCATGCATGCAAAAACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130558:ENST00000252854:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.201 A=NA C2=0.002
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=FE(50.5=100),PF0154011=Lipoprotein_7=FE(33.3=100),PF131661=AAA_13=FE(34.5=100),PF138741=Nup54=PU(41.4=92.3),PF045137=Baculo_PEP_C=PU(37.7=88.5)
A:
NA
C2:
PF123083=Noelin-1=PD(0.1=0.0),PF0154011=Lipoprotein_7=FE(47.7=100),PF131661=AAA_13=FE(49.3=100),PF138741=Nup54=PD(56.9=89.2),PF045137=Baculo_PEP_C=FE(59.8=100),PF045087=Pox_A_type_inc=WD(100=28.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains