MmuINT0113077 @ mm10
Intron Retention
Gene
ENSMUSG00000032172 | Olfm2
Description
olfactomedin 2 [Source:MGI Symbol;Acc:MGI:3045350]
Coordinates
chr9:20672135-20672773:-
Coord C1 exon
chr9:20672627-20672773
Coord A exon
chr9:20672355-20672626
Coord C2 exon
chr9:20672135-20672354
Length
272 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CATTTTCTCCTGGTGAGCAGGAA
3' ss Score
3.87
Exon sequences
Seq C1 exon
GTCCAGAATGTGTCCCAGTCCATGGAGGTCCTTGAGCTAAGGACATTCCGGGATCTCCAGTATGTTCGCAGCATGGAGACCCTCATGCGGAGCCTGGATGCAAGGCTCAGGGCAGCCGATGGGTCAGTCTCAGCCAAAAGCTTTCAG
Seq A exon
GTGGGTTCTTCTGAGCTCAGCTCTGAGGTCAAGAGAGTGGTTGGAGGGTTTGGGGGAGGGGCTGCAGTAAGAGTGATTGCAGTGAGAAAGCCAGAGGACCTGAGTTCCAAGGGTGGGGCCACGTCTGGGAAGAAATGAGGGGTTGGCTGGCCAGTGGGGTCCTGAAGGCATCCGTTGGCAAGGGATGAGCACTGTATCCAAGATGATAGGGGGTTAAGCTATGGGTCAAGGGTCAGGGGTCAGATCGGCGGCCATTTTCTCCTGGTGAGCAG
Seq C2 exon
GAACTGAAGGACAGGATGACAGAGCTGCTGCCCCTGAGTTCAGTGCTGGAGCAGTACAAAGCAGACACACGAACCATTGTGCGCCTGCGGGAGGAGGTGAGGAACCTCTCTGGCAACCTGGCTGCCATCCAAGAGGAAATGGGTGCCTACGGGTACGAGGACTTGCAACAGCGCGTGATGGCCCTGGAAGCCCGACTCCATGCCTGCGCGCAGAAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032172:ENSMUST00000034692:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=FE(49.0=100)
A:
NA
C2:
PF123083=Noelin-1=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCATGGAGGTCCTTGAGCT
R:
CTGTTGCAAGTCCTCGTACCC
Band lengths:
301-573
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types