GgaINT0038187 @ galGal3
Intron Retention
Gene
ENSGALG00000005203 | OLFM3
Description
NA
Coordinates
chr8:12205061-12209243:+
Coord C1 exon
chr8:12205061-12205216
Coord A exon
chr8:12205217-12209023
Coord C2 exon
chr8:12209024-12209243
Length
3807 bp
Sequences
Splice sites
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
3' ss Seq
CATTCGATTGCCTTTAACAGGAG
3' ss Score
6.76
Exon sequences
Seq C1 exon
GTTCAGAATATGTCCCAATCTATTGAAGTTTTAAATCTACGGACTCAGAGGGATTTCCAGTATGTTTTAAAAATGGAAACACAAATGAAAGGGCTGAAGGCCAAGTTTCGGCAAATTGAAGATGATCGGAAGACATTAATGACAAAGCATTTTCAA
Seq A exon
GTAGGTTTTATTTTAACAATAACTTTGAAAGCCTGCTGGAAGCAATGTACTAAGCAGCAATGCATGGACTGCTAAGATCTCACCTTGAAATGCTCACACAAGAGCAACATTAAGAAAAGCATAGTAAAGTTTCCTTTATGATGATAGTCTTTTGCTCTGTTCAATTTAATTGTGCTAGGAAGTAACTATTAATTATTAAAAAATTAGAGAAATGTCACTAGAAACATAATCCTGTTTTTTTCTCTACCAACTTGCATGTCATACTGAAAAATTATTATTCATTCAGGATACATTGATAAATGGGGAGATCCAAGGAAATTAATAACAAATAAGTAGGGAGTTCTGCACTTTCTCTGTTACTTGATATTTACTGCAGCTGAAGAAAAGAAAGCCTATAATAAATCAGTTGTTGTAATTTTTATCCAGTACAGTTAAGATCTAATTTCATGTCTGAAGCTTTGCTATTTTGAGTTTAGGATAGAGGAGGAGGGCAATTATTCCCAGTCACATCTGTGTGATTAAAAAAAGACTTCTGGGGAATTTAATGACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTGCCAATCTTTTTCTGAGGAGGAGGTTCACAAAATAGCATTGTATACTCTGAAAATAAGCTATCTGAAGTACTCTTAAGGAAAAAAAGATATAAGAAGAAAGTATGTTCTACAAATACCAGGTATAATAAGTGGATATTTCTGGTCTGCAAGATAGCAAGATAGAATCTAGAAAAACCATCCTGCAGATTAAACTATTTTTAACTAAGTATATATATTTTTAAGTGTTCATGAACCAAAATGAACTTAGTTTTCTAATCAGTGCTGAGGTAAATAATTACATAGACAATTTCTTTTTCTGATATATTGAATATCCAACAGGTCTTAGTAATATCAGGAATTATTACATTAATGATCTGACTACCAAATTTAATATTTTCTTTCATCATTCTTTATATTAGAGTTTGAGCACATACATCAAGTCATTTTCAGGCAGTAAGAAATGCCTCTGCCTTTTTTCTTTTTATCACTCATTGCTACACCACCACTGTATTTGTGTAACGTTGTTATATAATCACTATGTATTCTGCATTCCTGTTATAAACTTCCTTGGAGACAAAATATCTAAATTGACGTTCTAATGCTTGACATCAGAGTTAGTAGATTTCTGCAGCACTGACCTTTAAAATATTCGATATTTGTATTGGTCAGTCATTTAACTTACATTTGACAGTTTGCCAGGTGGACAAAACAGATTTCTAGACATATAACTGATAGAATAATTTGAAAGGTCAACATCATACAGTATGCTGCTAGCTCTCTGAAATTTGATGTACTAAATTTCCAGTCCTTTATCTCAATTGAGACAAAGAAATTCATTCTTAACATACCATTTCCTCTCATACTAGCAGGCACTAAGTGCTGCGATATGTCTACCACGCATTCATATTTCAGTAGAATTTAATTCTTGTACCATCACAGAAACAAGTTAAGGAGTGTCAGAAGATACTTTTTTTTTTTTTTTTTTTTTTGTAAATGGAAACACTGAAATCATCTTTATATCATTATATCATTTACTGAAGTAAGATGTTCTAATGTTGTGGTTCCATATTTATGACAGCCAAAGAGTACAAACTTGATCCAGGTCACATTTCATCATATGGTCATACTTCTGTCAAATCAGCATTCCCTATGTCTCTTACACACATTTTGCTAAGTTACAATCTTTTCATTTTTTTCCATCATTGTTTACCCATGATTTTTCACTGTTTATGGCTTCATAGAAACAAAGCCTAAGTTCATTACCTCAAAATTAAATAAAAACTTCAGTTTTTGAAGCTCTGCTTTCCATGTCACAAAGTCTACTCTTGCTGTCATCAATAAAACCATAACTATTTTGTTTTACAGATAAAGTAGACTAAAGCTGAGCTTTTACTAAGAACAATCATACAAAAATAGTTTTAGCATTAGTAAAACTCAATAATTCAGCTATTAAAGCATAATTGGAAGATCCCTTGACAACAAAATCAAAGATAAAAAGGAAACTCTTGATTCTCATTAATTCATAACTATTATTATGCTTGAATTTAAAATGCTAATTTCTAGCTACTAAGATGACCTGTGCGCATACCCTTCTGAACATCACATGTAGGTCTTTATTTTGAACAAATTATAATTCCAATATGAAAGGAATTGTTAATGCCACATGGATAAATTAGCCATGTGATGAATAGATGCTGCAGACCTCTCAAGCAATTTTCAAACCTGTTTGAGAAGTGAAAACTCAGAGGTAGATTTTCAAGCATCTGTAATGGCCAACCTGATCCACTTTGTTCATATTTCCTTACTAGCAAAGCATTCTGTTTGGCATCAAATTGTTTGGCATCAAATTATTTATTTTTGAAATGTTTTACCATGTTTATTGCATCGTATAATACAAGTGATTTAAAAAACTGTGTACATGCATCTCCGTGCATCTGTTGTTATGCTAACTTCTGCCTACATTTGCTTCTGCACCTCTTCCTTGTGCTTAGGCTTCCATCTAGTTCTCTTCTGCTTTCCCTTTTAACCTGCTGACTACACTCAAGCCATCCTACAGGACTGTATTTTCTAATCCCTTAACAACAGCCCCTGCCTGGGCATCCTCATCCATTCCCTGTCTCTATTATCACCTAATACTAGTACCTAACATGTCTCCATTTCCACCTTTTTTTATTGTTTTGCCCAGTCTCTCATCTCCCCACGTCTCTAAGCATTTGCTCATGGACATCCTGCTGTTTCCAGAAATTAAAAACAGATATGCAAATCTCTGTGTACAGCTGATACATCAAGGACAAACCTGCATGCTTCTCATAAAACAAAATATTTTGATTGCAGGGATTCTTTGAGGATTTCTACATTGCAACGAACAGGAAAAACAAAAACAAAAACAAAACAAAACAAAAAAAAACCCAAAAAACTCAAACAACCTAATTTAATAAAGATTAAGATTTCTATCTTTAAAAATAATTACAAAATAAAGGATGATTAGGCACCATAAGTTGCAACCAGACAAATTCTCAAAGAACATGACAGCAAAGTCTGAGAAAGGGTCAGCCAGAGATTCCAAACTGAAGCCTTGCTTCTTTAATAAACACTTAAGGATAGGATTGGCAACATAACACCAACTGCACATGGCAATAAAATGATTTTCAATAGTTCACAGCAAAAAACAATAGAGGAAGCTCAAAGGCACCTAGTGATGTAGCTGGATGACCAGTACAAATCCGTCTAAGAACCATGCATATTTTTTGCACCAGAAGAAATAGATATATATGATTGTGACCAGATCAGAACTAAATAGGGTTCAATAGACATTACTAAAGAAATGAACTCAGCATTTCTAAGGAGTGAAATAGAATCTGCTATAAAAACAGGTATGACATCTTTGGCTGCCACTATGTGTACCAGCCTAATCATCTTCTCTTAAGAAGTTAGTTGGGAGTTTATACCCTCTGGATGGAAAGTCAGACCTTCAACATTTTTTGTTTAAATCACTTGAAGGTAATCATGTAACACAGCAGAAAGAAACTATTATCTCTGTATTTTATCTACTGCTTACTGCCATTAATTCTGAGGTTTCTAAAGCTCCCACAATAAACAACAAAAAAAATTGATCTGTAGCTAAAATCAGTAATCATTTTCAACTCAATTTAATAATTACGCATAAATACAACTTAATAGGAAATGAGAGGACTGAACTCCTTTAATCTACTCTAACACACATTCGATTGCCTTTAACAG
Seq C2 exon
GAGTTGAAAGAAAAGATGGATGAGCTCCTGCCACTGATCCCAGTTCTGGAGCAATACAAAACTGATGCAAAATTAATCACCCAGTTCAAGGAGGAAATTAGGAATCTGTCTACTGTCCTCACTGGTATTCAGGAAGAAATTGGTGCTTATGACTATGATGAACTACACCAGCGGGTGCTCAGTTTAGAAACAAGGCTTCGAGACTGCATGAAAAAGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005203:ENSGALT00000008354:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=FE(50.5=100),PF097304=BicD=FE(45.1=100),PF093215=DUF1978=PU(36.4=61.5)
A:
NA
C2:
PF123083=Noelin-1=PD(0.1=0.0),PF097304=BicD=PD(50.4=77.0),PF093215=DUF1978=PD(61.4=73.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]