BtaINT0105574 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000845 | OLFM3
Description
olfactomedin 3 [Source:HGNC Symbol;Acc:HGNC:17990]
Coordinates
chr3:41608900-41613928:+
Coord C1 exon
chr3:41608900-41609055
Coord A exon
chr3:41609056-41613708
Coord C2 exon
chr3:41613709-41613928
Length
4653 bp
Sequences
Splice sites
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
3' ss Seq
CAACTGGCTGCTTTTCACAGGAG
3' ss Score
5.81
Exon sequences
Seq C1 exon
GTTCAGAATATGTCCCAATCTATTGAAGTCTTAAACTTGAGAACTCAAAGAGATTTCCAATACGTCCTAAAAATGGAAACACAAATGAAAGGGCTGAAAGCCAAGTTTCGGCAGATTGAAGATGACCGGAAGACACTAATGACCAAGCATTTTCAA
Seq A exon
GTAGGTGTGACTTCAGCTGTCTTATTAATACAAATAAGACACTGAGTACAACGGACAGCCACCATGACACTCAGCTAGAAATAACTGTTCATCGGCCCATATGCATAAGGTTCAGGACTCAATGGGGACATCAATCATCTCTCCACTGAAACTGACCATTAGCTGGTTGGAATGCATAGAAAACTTGCTCTAAAAACAGCCTCACCCTCCTTGAGCTAGATGGATATTGTGGATAGATTTAAAGGCATTTCAATGTGTATGCCAATGGGAAATATAGGAAAATCAATAACTAAATTTGTCAAAGACTTTATGATGATTTTATGCCTTGCTAATATGAGGAGAAATATAGAGACTATAAATTATTAAAAGAAGCAATAATACCACCATTATTAACCGCACATAGAAGAGGGTTGGTTTCACTATTTACAAATAAAGTTTTTTTTTTTTCATGTTTTAAGCCATTATTGAGTATCTAGAAACACTGAAAATGGAGAAATGGTGCTTTTGAGCACACTATGTGACACTGTCGTAGACTGAAATAAAATCTGACCATGATAATGCCATTTGATCTTCTATGAAAAAGACACAGTCTGCCTGACAAAGGCACAGGACATAGTTTATAAAACAGACTAAGATTTTACAAACATAATAGCCTCTGCTTTCCCTGCCAACTAGGAAGTAAGATTCATTGCTAAGGCTGAGGGAATGGTCCTGAATTCAAGTTCTTGGTCAAACATCAGAAGTTATTTTCACACATAACTGTGATTGGCAGGGAGATAGGGTCACAAAATAGGATCTCTGGATGACACAGTTTAATATGGCAGAAATTATCATTGTTTTGTCATTTCCTTCATTGCTGCTCAGGAGCCTGAATAGAGAGCCAGTTTTAAAGTTTTATCAGAAAGATACAAAAGAAGGACAAGAGGGTAAGGAAGTTCAGGGTACTGATGAGAGAGGGGACTAACGTGATGAATCTTGAGGTTAAAGAGAGAAGCAAGCAAAGCCAGAAGGTTAAGAAACTATAACAAATCAGAGCAAGGCCTAGAAAATAAAAATAAATTGAAAGATTACTGTGAATGAGACAATAAGCAAACTTAGAAGGATAGAGAATTTATGGAGAAATGGTAAACACAGAAGGATATAAGGTTGACAAGCAAACAAATTAATTTTAACCAATATTTATTGAGCACATAGTGTGCACGAAACAGTGTTGGGCCCTCTGCTGGGTATATAACACATAAACTCTCTTCTGTGAAAGAGACATAACAAACTGGTCACACTGACAGTAAAAAGAGGCATAAACATTACTTGACAGCACAAAGGGAGAAGTGATTAATTTTGTTTAGACAACTTCACGGGAAGGGTTATCAAAAATCTTTTCAGGGAAAGATTTACCAATAATCAAGAAAATGGTTTTGGACTAGTGCTCACTTTCTTCCCCAGAAAATATTAAATCACACAGGAGAGCAAGAAAACCAAAAGATTTTCTATGTCAATTTTCAATATTCAAGATTAGGGTATACAGCAATACAGTGAGCCTGATGCTGCAGCCATCAACCAAGTAAGAAATGACAAGCCGGCACTTACAGCGCCTAGGGAGCATTCCCAGAAAGGAAGAGGGACAGAAGGAGAGGAGCTCGGAGTTTCTGGCTCAAAGTGAAAATCATTCAAAGTTAGATGGACAACATAGAACTCATGCCAAAGAACTGCTTGCGGGACCAGGGCTGGTAGAGTTGGTGACACATGATGATGTATGTGCATCTATGGGAACTTTAGGGAGAAGATAGGAGACAAAGAAACAAAAAGATACAAGGCTGGGAGAAAAAATAAAAGAGAGAGAAAACTGGCTATTCTGTAAGTGTGTCTAGCAGCAGACAAGTTGCCGATAAGAAAACTTAATTTTCAGGCAGCATCATAGGACATAATGATTTTGATTTTCCTAGTTCATGTAATCCATGTATATACTGAACTTGTATGTCAAAATTCATGTAGCAATAATGATAATAGCATCATTTTTTCTGAAGAATTACATGTATTCAACATATAGTTTCAATAACTTTAAATATATTATGTATTAACTACTTTAATCCTCACAAAAATCCTGTAAGGTAGACACTATGCTTATTCCCATGATTCAGATGAAGAAACTCATGTACAAAGAAATCATGCAACTCATCTAGGATCGTATATCTAATATGTATCAGAACTACAAAGTCCAACTCCTAAGTTAAACCTCTTTAAACCAGTGCTACATTGCCTCTCCAACTAAACCATAGTTCTCTGAATTAAATATAATAATAATAATTAAATGCTCAATATATACTTGCTGAATGTGTTTATTCACCAAGTCCTACCACGAGTCAGATTTTGCTCTAGCTGCTGAGCTGCCATATTTGAGAAGAAGAAATGGCACATTCCAAAAGTAAGTTTACCATTTAATACGTTTACCTTGGAAGAAAATCCTCCTCTAGCACACCATCTTCAACTTGCCAAAAAATCTAAGTATGTTGTATCTTCCGTATCCTTTATGATTAAAAAAAAAAAAAAAAAACTTGTCTCAATATCATACTTGAGACTGTCTTCTTCTATGAAGAGATCTTGGTTGGGTAAGACAGTCTAGCTATACTCTTTGCTATAAGAGCAATGTAGTAGAATGTGAAATTCAAGAAAGGATTATTAAGCACACAGATCTGTGTTACTCTACTTTCATATTTTAAGTATTTGATACATACATTAGTTAGACTTTCCATTGCTCTCTGACAATTGCCCTGAGTTAGAACTGACTGCCAATAATTGAATTATAAATTTTTGAAAAGATTCCAAAATTTATATACATATAAACTGGTAACTCAGATGGTAAAGAATCTGCCTGTAGTGCAGGAGATATAGGTTCGATCCCTGGGTCAGAAAGATCCCCTGGAGAAGGGAATAGCAACCCACCCCAGTATTCTTGCCTGGAGAATTCCACGGACAAGAAGACTGATGAGCTACAGTCTATGGGGCCATAAAGAGTCAGACATGGGCGAGTGACTAACACTTTTACCCATATCTATATATAGATTTTAGCTTAGGGGAAATAAAATGCCACCGAAAATGTCATCTGAATTGCCCTCTTTTCAATATACCCATAAGTAGAATGTAAAACTCATCACTGTAACAGTTGTTATAATGTGCAGTAAATGGTACTATCAGAACTCTTCTCATTAAAATTCTAATGAAGCAATTGTGTCTTCCTTTAGGGATAGCACAAAATGCTCAAACTAAGAAGTTTATTTCAAAATGAGACCCTAAAATGAGCAAAGCTCTGCAACTCTGCCTTTTGACTGTGATATTTATTAATGTTTCTCATCATTAAGACCCTCTGCCCCCTCCCACTCAACATGGACATACAGATAAATGCTGAGAATTCCAGTCTTACAGAACACATGGAAATTTCCCCACAAGATACAGAAGCCCATAAATCAGGGTGGCAATGGGAGCTCTTGTTATTTTAACACATTGACAGTAATAACATCTTCTAAACGTAATTGTAAAATGCAATTTTCAGCTCCTTAAATTAGTTAGCATACAGCATGGTTTCTGACAAAACCTATGGATTATTCTCAAATGATCATAGCAGTGACAGCTCTTCCACAAATGAGAACATTTGTAATAAATTTACAACTGAATCAAACTCATGGAATATTTTTACTGGGTACCACCATCAACTTAAAGGAAAGGAAAAAAAAAGGTGACATGGCCAGAAACTCATTCCTAAAATAAGAACGAGGGAGAAACTGCATTGGAAAGTATACTTCTTGTTCTCTAGACAAAAATCAGTGTTTCCGTTTCAAAAAACTCTATGCTCATTTATTACATAAATCATAACCACCTTAGTCCTTGAAAGAGTTAATTTACTACACTGGTAAGCAACTCTGCCCTACATAAAGAGCTCTAAATTACCTATGCTAAGGCAAATGAAGTCTGAGTATAACGAATAATTCAAAACAGTAAACAACAACATACATTTCTTTGAGCTTTGCAAAGCTTTGCATGATTTTTTTATACTTGATGAACTTACATTCCTAATGATGCTGTGCTAAGAAGGATATTAAAAAGAGGGAGGAGTAGAAGGGAGGAATGGAACAAGCCTAAAATTGGAAAAACTGTGTTAGTGTAAAGCTCTTCCAGGGTTCAAAATTTTCTATAAATACCCTTATATTATTGATACTTAGTTAATGGGTAAGTAGACTTGGCTAAACAGGGTATTTGACCTATTTATAATAATTCATATTTAGAAGATGGACCATACTGATATTTCCTGACTAAATAATGCATTGTTCACTTTATAAAAAGTCACCAGAAAGCAATATTTTACATAAACCCCTAACTGCTACCATAGGAAGTTCTGTCATTATGATAAGGATCAGTTCGTTGCATAGAAAATCATCTAACCATTTAAAGAGATGTTCTTGTACTGAATCGTGAGATAAGTGGATTTACTACTAATGATCATGTGGCCACTTACATGCTCCTGAAATACCCAATTTCAATAAAAAAATCAGTAAGGCATTATGAATCTTTTTTAATAATCTTCCTGTAGCATCATGACGAAGAATGTAGCTGCTTGATCTGGTTAAGTGACTCTCAGAAACAACTGGCTGCTTTTCACAG
Seq C2 exon
GAGCTGAAAGAGAAGATGGACGAGCTCCTGCCTTTGATTCCTGTGCTAGAACAGTACAAAACAGATGCCAAGTTAATCACCCAATTCAAGGAGGAAATCCGGAATCTGTCTGCTGTCCTCACGGGAATTCAGGAAGAGATCGGTGCCTATGACTATGAGGAGCTACATCAAAGGGTGCTCAGCTTGGAAACCAGACTTCGTGACTGCATGAAGAAGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000845:ENSBTAT00000054068:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=FE(50.5=100)
A:
NA
C2:
PF123083=Noelin-1=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]