HsaINT0118167 @ hg38
Intron Retention
Gene
ENSG00000118733 | OLFM3
Description
olfactomedin 3 [Source:HGNC Symbol;Acc:HGNC:17990]
Coordinates
chr1:101825026-101830827:-
Coord C1 exon
chr1:101830672-101830827
Coord A exon
chr1:101825246-101830671
Coord C2 exon
chr1:101825026-101825245
Length
5426 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CAATAGGCTGCTTTTCACAGGAG
3' ss Score
2.59
Exon sequences
Seq C1 exon
GTTCAGAACATGTCCCAGTCTATTGAAGTCTTAAACTTGAGAACTCAGAGAGATTTCCAATATGTTTTAAAAATGGAAACCCAAATGAAAGGGCTGAAGGCAAAATTTCGGCAGATTGAAGATGATCGAAAGACACTTATGACCAAGCATTTTCAG
Seq A exon
GTAGGTTTGACTTCTGCAATCTTGTCAATCCAAATCAGACATGGAGTGGGATGGACAGCAGTGGGGCACTCAGCTAGAAATGAATGTGCATTGGCCCATATGTGCAAGGTAAAAGACTCATGGGGGATTTCAGTCATCTCTCCACTGAAACTGACCATTAGCTGGTAGGAAGACATGGAAGTCTTGCTATAGAAAAAGCTTCATTCTTGTAGAGTTTGGTGGAGTTTCTGAAACAAGGGAAATTTCCCCAAGGAAAATTAATAATTAAATTATAAATGTTTCTCTAATGGTTTTATGCCCTGCTAATATGAAGAAAGATGTAGATGATATAAATTATTTAAAGAGAAAACTATGCCATTAATATGAGCATGTGGAGAGAGTTGTTTCATAAATTTATCCAAATAAAGTATTTTTCTAGATTTTAAGTGTTGTATTGGCAATTATTTACAAATACTGAAAATGGAGAAAAAAATCATGCTATGTCAACTTTTGTTAACTATATATGAAAGAGTTATGAATTTTAAGAAAAAACTCGGCCGGGCGTGGTGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCCGAGGTGGGCAGATCACAAGGTCAGGAGATTGAGACCATCCTGGCTAAACAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGTGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGGATGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGACAGCGCCACTGCACTCCAGCCTGGGCAACAGAGAGAGACTCCGTCTCAAAAAAAAAAAGAAAAGAAAAAACTCTTGGTCTGCTAATGCAATCTCAGCTCCCATTAAAAGTAAACCACTTGCCTTACCTAGGCATAGCACATAGTTCATAAAACACTGTGGTTGCCCACTTAATAGCCTCTGGTTTTCTTGTCAGTTAGGAAGTGAGATTCACTGCTGATGTTGAGGGAGTGGATCTGAACTCAAGCCCTTGGGCAAGGAAAGGAGTGCTTCCTACACATAGTGGTGGCTGGTGGGGAGCTAGTGAGGAACATGTAACCGAGTCTCTGCATAACACATTTGAATGTGGCAGAAAGTTTCATGGTTTTGTAATTTTCTTCAGTGGTACTCCAGAGACTGAGTAGAGAGGTATAGAAGAACATTACACCCTGAATTGGTTTTAAAGTTTTACCCAGACGGTCACAAAGGAAGAAAAAGAGGGCAAGAAAGTTGAGGGTATTGAAAAGAGAGGGGACTGAAGTGATTAATCATGAGGTTTAAATTGAAGAGAGAAGTACACAAAACCAGCAGGTTAAGTAATTAGGACAAATTAGAGCAAGATTTAGAATATACTTAAATTTAAAGATTATTGAAAATGAGAGTGTGAGTGAACTGGATAAATAGGAAACTTATGGATAAATGGTAAACAGAGAAGAATATGAGGATGAAGAGCAAAAGAATTAATTTTAGCCAGTATTTATCGAGCACATACCATATACAAGGTGCGGTTGGCCCCTCTGCTGGATGTATTATACGTAATCTGTCTTCTATGAAAGACAACTAACAGGCAGGTGAATTGATGGTGAATAGAGGCATAAACATTACTTATGAGCACAAAGGGAGGAGAAATTAATTTTGATTTAAAAAGACCAGGAGAAGAGCTGGTTTCGTACTAGTGACCCTACCCCTCCACTATTAAATTATAGGGGGATCAAGAAAACCAAAAGATTTACTATGTCAATTTTCAATTCTCAGGGTTAGAGTGTAGATGGTAAAATAATAATGGGAACCCAATGCTGAGGTCATCGGCAAAGTAGAAAATAGTAAGCTGGCACCTTAGGTGTGGGAAGAGCATTCCCAGAAGGAACTAGTCAGGAGGAGAGGAGTTCAGACTGTTTGGCGTAGATGGACAATGCAATGAGAATTCTGCAAAGCCAAAGGACAGCTTGAGAGTGTCAGGGTTGACAGGGCTGGGGAATGCATGATGAAGCATGTTCATCTTTGGGAACTTTTGCGAGAAGACAGGAAACTAAGAAACAAAAAGGATACAAAATTGAGATAAACCCCAAAGAAATAATGTACCTAGTCCTATAAATTGCCTAGCAGCAAATCAGCCAGGCTACTAATAAGAAAACAATTTTCAGGCAGCAGCACCATGTGACATAATGGCTTGGATTTTCCTAGTTCATGTAATCCAAGTATACGCTGAAGTTATATGTCAAAATCCAAATAACAGTAATGATAATAACAATAATGATTTTTCAGAATATTATACATATTCAAGGTATAGTTCTGAGCACTTTCAGTATATTAACTGTATAATGCTCGCAACAGTCTTGTAACTCAGGCACTATTTTCATTTCCATTTTAAAGATAAGGAAACTGGAGCACAAAGAGTGTATTGGTCTATTCTCACACTGCTATAAAGATCTGTGCTGAGACTGCGTAATGTGTGAAAGAAAGAGGTTTAATTGACTTACAGTTCTGCATGGCTGGGGAGGCCTCAGGAAACTTACAATCATGATGGAAGGGGAAGCAGTCACCTTCTTCACAAGGCAGGAGGAGAGAGAGAGAGACAGAGAGAGAGAGAGACAGACAGACAGACAGACAGAGAGAGAGAGAGAGAGAGAGAGCATGAATGCAGAAGTACCACACTTTAAAACCATCAGCTCTCATGAGAACTCACTCAGTATCAGAACAGCATGGGGGAAACCACCCCCATGATACAATCACCTTTCACCTGGTCCCTCCCAGACATATGGGAATTACAATTTGGGATAAGATTTAGGTGGGGACACAGAGCCAAACCATATCAAAGAGGTTGAGTAATTTATCCAGAGTCGTATATCTAATATGCATGAGAACCAAGATTCAAATTCAGAAAGTCCAATTCCAAACTTGTACCTTCTAATACTAATGCTGCATTGCTTCTCCAAGTAGACTTTAGGTCTCTGAATTACAAATAATAATAATTAGGTGCTCAACATATATTTGTGGAGTTTATTTATTTCTTGAGTCCTACCATGAGTTGGATTTTGTTCTAGGTGCTAGTACTATACTTGAAAAGAGGAAATGGAACGTTCCAAAGTAAATTCAATATTGAAGAATACTTTTTAAAAAATCTTCCTACCCTGTCTCTACTAAAAATACAAAAACTTAGCTGCGTGTGGTGGCAGGCGCTTGTAGTCCCAGCCACTCGAGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGTGGAGTTTGCAGTGAGCCGAGATCGCGCCACTGACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAATTCTTCCTCTGTTACACAATTTCCATCGTATCAAGAATGTTAAGTAGGTTTTGTCTTCTACACTTTTTCAGATAGAAAGCTTATGCCAACTACTATACTTGAGATTGACATTCTTATATGAAGAGATTGATGTTGGCTCTACTCTAGCTAAGAACTTGGATGTAAAAGCAGCATAGTAGAAAGTGAGATTCTAGAAGAGATTAGCAAACACAGGTCTATGCTATTCTACTGTAATCTTTTAAGTATTTGATATGAGCATTGGGTGGACTTTCCAATGCTCTCATATAAGTTTTCAGAGTTTCACAATTGATCGCTAATAATCAAATTATGAATTGTTGAAAAGATTAAAAAATATAAATATCTAGTTTTGAATTGAGGGAGAAGAAAAGCTACCAACATTTTGACATTGAATTGCTCTCTTTTAAATATGCCCATAGTAGAATGTAAAACCTTTGATTGTAACAGTTGTTATAATGTGCAGAAAATGATAACCACAGAAATATTTTCATTAAAATCCTAATGAAACAATTGTGTATTCCTTTAGGGATACCACAAGATACTTTAATAAGTCTATTTCCAAATGAGCTGACAAAATGAGCAAAGCACTGCAATTCTGCCTTTGACTGTGATATTTATGAATCTTTCTCATTATTAAGTCTCTCCTTAGCCTCCCACTCAATATGTACATGTGAACAAATTCAAAGATTCTGAACTTACAGAGCAAGTGGAAATTTCCCCACAAGAAACTCAAACCCATAAATCAGGGCAGCAATGGGAGCTCCTGCTATTTTAATGCATTTATAGTAATAACATCTCCTGAATGTAATTTAAAAATGCAATTTTCAGCTCCTTAAATCAGTTAGTGTACAGTATAATTTCTGACAGCATCTATGTATTATTCTCAAATAATCATAAGAGGGACTGCTCTTTCCACAAATGACATTATTTCCAATAAATTCACAATTGAATCAAACTCCTGAAATAAATAAAGAAATATTTATTTATTTTCACTACTATTTTCACTACTATGAAGTTAGAGAGAAAGAAGTAACGGTGACATGTCTAGAAACCCAAGGTGAAACTGTAGGCGTGCTTCAGTCCTGTTACGGCTAGGGGTGAGGGATACTGCTTGACAACATACACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGACGAAAGTCAATGCTTCAGTTTCAAACAACTCTGTGTAACTGGCTCATCTATTACATAAACTACACACCTTGGTTTCTTAAAGAGTTAATTCGCCACATGGGCAAGCAATTCTGCCATACATAACGACCTTTAAATTATCTATGGTAAGATAAATGGAGTCGAAGTACAGGTAATAATTCAAAATAGTAAACAGTAACATACCTTTATTTGAGCCTTGGGACACTTCATCTGATTTATAACACTTACTGAACTTACCTTCATAATGAAGTTGTGCTAAAATTGATATTTAAAAGTTCAAGGAATACCTGAGCACAAAGGAAAAACAAAGTTGGTTGATGGCCATGATGGAAAAATTCTAAGTGTCAGAAAAAAGCTGATCCAGAGTCCACAATTTTCTGTATGTGCCCCATAACATGGATACTTAGTAGGTGGATGATTAGACTCAACTGAACAATCATAGGGTATTGACCTATTTTCAATCACTTTATTCAAACTTAATTCATAATTAGAAGATGGATTCTGCTTATATTTCCTAACTAGATAATACATTGTTCACTATATAAAATGTTACCAGAAAATGAAATAGTATATAGTCCTAGTTTCTACCATAGGAAGTTTTTCTAATTATGATAAGGATATATTTGTTATAGAAAACTAAGCATTAAAGAAAGATTCTCATATGGAAAAGCTGAAATAAATGGACTTACTAGTAATAATCACATGACCGCTTAAATTTTCACAAAATACCTAATTTCAACCAAAAATCAATAAGAAATGTTGAAGCTGTTTTAATAATTTCCTTTAAGTATCATAATAAAAAGAACAGAGCAGCATGATCTGTTTTAAATGACTCTCAGGAACAATAGGCTGCTTTTCACAG
Seq C2 exon
GAGTTGAAAGAGAAAATGGACGAGCTCCTGCCTTTGATCCCCGTGCTGGAACAGTACAAAACAGATGCTAAGTTAATCACCCAGTTCAAGGAGGAAATAAGGAATCTGTCTGCTGTCCTCACTGGTATTCAGGAGGAAATTGGTGCCTATGACTACGAGGAACTACACCAAAGAGTGCTGAGCTTGGAAACAAGACTTCGTGACTGCATGAAAAAGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118733:ENST00000338858:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=PU(96.0=98.0)
A:
NA
C2:
PF123083=Noelin-1=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development