RnoINT0105272 @ rn6
Intron Retention
Gene
ENSRNOG00000017969 | Olfm3
Description
olfactomedin 3 [Source:RGD Symbol;Acc:628672]
Coordinates
chr2:217978493-217983563:+
Coord C1 exon
chr2:217978493-217978648
Coord A exon
chr2:217978649-217983343
Coord C2 exon
chr2:217983344-217983563
Length
4695 bp
Sequences
Splice sites
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
3' ss Seq
CATTCTACTGCTTTCCACAGGAG
3' ss Score
8.85
Exon sequences
Seq C1 exon
GTACAGAATATGTCCCAGTCTATAGAAGTCTTAAACTTGAGAACTCAGAGAGATTTTCAATACGTCTTAAAGATGGAAACCCAAATGAAAGGGCTGAAGGCCAAGTTTCGGCAGATTGAAGATGATCGGAAGACGCTAATGACCAAGCATTTTCAA
Seq A exon
GTAGGTGTGAATTCTGCTGGTCCAAGCATAGTGTGCAGGTAGCACATTACTCAGCTGGAAATAAGTACTCCTGGGACCATGTACAAAGTTAAAAACTCCCTGGGAACATAACTGTCTCATCACTAAATAGTGACCATTAGCAAACAACCAGGAACAAAGAAGACTTTTTTTTAAAAGGTGCTGCCCATCAGAGACGTGGAGTTTCTGGGTAGAATTATTGGTACTTTACTATCTAAGACAAGGGAAAATCCCAAGGAAAATTAATAATTATGTCATCAATGATTTTCCTAATGAACTTATCCTACTGTGAAGATATAAATTATTAAAGAAGGGAAAAAATAACGTTGATGACGATTTTCAAAGGCTAGTTTTCAAAGTAAGTGAGACCTTTAAAAACGATTTTAGGTGGTTTAACGCAAATTATCTAGAAACTAGAAATGGAAAAATTTGCTGAGCATGCTGGGCAGACTTTATTAATGATTTATGACAGAGTCATTTATTTAAAAAACTTCCTGGTCTGATAATGTAACTTTAGCCTCTACTAAAAAAGTATTGCTTTGTCATAAAAAGCATAGCACAAGAGTTTTCAACAACCTTAAGGTTGTCCACAGATACTATCTCTTGTCCCTCTGCTAATTAGACTATGAAGTTCAATCACAGAGTGAAGGGAGTGGGTTGAATTCAATCTTGTGGTCAAGGCTTTGAGCATACTGGAAAAATATAGGGAGTTGGTCAGAGACAAACAGGATCTTTGAAAGGCACATTATAATGAGATAGAAATCATCAGGGCTTAGAATTTTCTCTGTAGCCTCTGGAATATCAGAAGCAGAGGTACCAATGAAAGACATCACTATATTCAAGTTTCAATGGAAGAAACAGGACAGAAAAGTTGAGGATATTGACAAGAGAGAAAGTGAGGAATCTGAACTGAAGAGAAATTTAAAGAAAACAGAAATCTTTGAAAAAGAGAAAGAAGAAAAGAATGGGTTATAGCAAGATGACAGAATGTTGAAAATATGTAAGAAATGGAGGAAAATAATAATCAGGGAGAAATAAAAAATTCTCAACAGGCACCCATGTCAGGAAGAATTCATTGATACAATACATACACTTTGTGACACTAGGCCAGGCCCTTCCTAGAAAAATGAAGCACAAACTCTTTCCATGAAAAGGACATAAAAGGGAAACAGACTGGGATCAAAGCAAGCAGCAGCAGTGTTTAAAAGCACAAAAGGAGATTCATTTGTTCACTGACAGTCTGCCTGGGATTTAGGTGATTTGACAGTGTTCAGGAAAACCATGTTGGATGTGGCCTTCCCCTCTGAAATAAGAAATTTCAGAGAGGATCTAAAAATTAAAGAGAGTTTCAATGCTCAGGATTCAACAGTGTGAACCTGAGGCTGTGTCCTTACCAAAGGAGACGATTGTGAATACTAAGTGGAGGAGAGAAGCACACCCAGAAAGGACAGCAACAGGAGGACAGGAGCCCATACTGTACTCAGGAGACAGAGTGGTGCAGACTTGGTAGAATCAAGGGACCCATGTAAGCTTCCCTGGGTCAACAGGACTGGGGAATGCATTTTTAGGAAACAAAGAAAGAAAGCTGAGAGAAGCCAAAAACATATTTGCCCTGCTGTATATAGGGTTTTCTATAGTGAAAGCCATAGTGTCAATTAGAATACTGAATTTTCAGAAAATACCAGGTGATTGTGATTTTGATTTTTTTATAGTTCACATAATCCAAAGAGATGTTGGATATGTAGAAGTCTAAATTTCAGTTACTATAATGATAACCATTGTTCTGGACATACATATTCAGAGCAGAGTTTTGAGCATTTGTATATATTAATTGGTCCAATCATCACATCTATCCAACGAACAAGCACTGCTTTACTGTTTTTATCCCCCATCAAATGAGCTAATGAACAATTATACATTTTCTAGTACCTAATCGAAGATTCATATTGACAACATCTAACTTCAAGCCTGCAGGTCTGAACGGATAAACTAGGTCTTTGAATTAAAGTGATAGGGACTGGAGAGTTGGTAACGTTTGTAAATTATTGTTAGTACGAACATAAGGACTTGATTTCTGATGCCCAGAATACATCAAATAGTGACAGGGTTTGGGGTGTGTGTCCTCAGCATTGGGGAAGTAAAGGCAGACATATCCTTAGATTCCTAAGTAGATAATATAGCCTAATAGGGGGGCTCCTGGAAATTTTGAGAGACCCTATCTCAGGGGAATAAACTCTAAGTACAGGATGATTAAGGAAGACACTTGAAATCAACCTCTGGCCTACACAGTGGTGAGTATACTTACACACACACACACACACACACACACATGCACACACACATACACACACACACGCACACGCACACACATGTACACACACAAACTCATGCATAGTCCCATACACATGCATGTGTACACTTGCAGCACACATACATCCACACACATGGGCACACACATACATAAGCATACAACCATGCACACATACATATGCACACCAACACGCCTGCCAAAATTCCCACATTCATAAGCTCACTCCTCTACACCCAAATCACAGTAATAATCAGGTGCCCTAAACATGCTTATGGATCTCATGTCTTCCCTGAGTTACAGCATGAATCACATTTCTTCCTAGATGCAGAGATAACAAATGCTAGAAGTAGAACATTCTTAAACCAAGCTTAAGTGAAAAACTCCTTTATAAAATGCTCTCTGCTGCTGCAAAACTTTCATCTCACAACAAACACCGTCGTCTCTTCCTTCTGTGGTCTCTCGGGTGGAATGCTGAGCTGTCCGTCACACTGAGACCAACTGTTGTTGGCAAGCACTCTGGCTGTTGTCGGAGCTAGATAGTTGAAAGTAAAATTCTAGAAGGTAGCAGCAAAGCTAGACTTATGATATTATATTTTTAGTTTTACACATATGATATATACCTGGGTCCTCTAATAAGTGCCCAAAGCTTCAAAATTGATTGTCAAAAGTCTAGTAAATTTTGAAAAAGTAAAAATACTTCTTAATTCATCAAAGAAAAGAAACTTCCAAAACTTTGACATCAGACTGCTCCTTTGAACACCCGCTTGCAGTAAAATGTAAAGTGTTCAATTGTGGCACTTATTATAATATGCAGCAAGTGGGAGAAGCAGAACTCTTCTCATTAAAATTCTAATGAAACAATTGTATCTCCTTTTAGGAGTACTGCAAGATGCTTAAATTAATAAGTTTATTTCAAGATGAGACGTAAAATGAGCAAGCTCTGCAGTTCTACCTTTTGACTGCAAACCTTACAAATCTTCATTACTGAGATCGTTTTAATCATCTCATTCAACTTGTACATACAGAGAAATTCAAAGATTTCCGGGTTTGAGCTGCATATAGATGTCTCCCCACCAAAAACCCAAGCCCGTTAATCAGGGCAGCAATGGGAGCTTCTGCTCCTCGAATGTGTTTACAGTAATAACATTTTCTAAGTGTAATCTAAAAATGCAATTTTCAGCTCCTTCAATAATCATACAGTACGGCTTCCGACAGAGTCCATGGGTTATTCTCAAAGGATCATACTTTGGCACTCTTTCAACAGATTATATCATCTGCAATAAATTCGCAGTTAACTCAAGATCCTGTGGTACTTTCATTGTTCACGCCTACAAAATTAAAGGGAAAGAAGTTTTTGCAATAAGCATAGAAGTTGCGAGTAAAAGTGCAAGTTGTGGTCCAGGTTTGTGATGACGAGGAATAGGGAACACTGACAACATGTGTTGCTTGGTTCCTTGACAAAAAAAAATTCAGTGTTTTAATGTTGAACAGCTCTGTGTACCTGGCCCAACTGCTATCTACATTATGCACCTTGTTCCTTTAAGGAGTTAAATCACTGCATGGTGGATAAGTAACTCTGCACTCTGTAATGACATCTTAGTTATCTATGCTAGAAAACAACTGGACAGAGTTCACTTAATGATTCAAAATGGAAACAGCAGCATATGTCTCGTCAACTTTTGCAAAGCTTTGTATGATTTATCATGTAGTTGAACTTACCTTCCTACTGAAGTTCTCCTAACATGAATATTCCACAGGACAGGAAACACCTGAGGACAAATGAAAGACAAAGCCAAACAAACACCAGAATCGCCAACAACTGGCCCTAGAAACAGTCTTAAATTCAAGAAAAAAGTTAGTCTAGAGTCAAAAATTCTCCTTTATGTAGTTCTATGGTATGGATATTCAGTTGTGGCATAATTCACTTTCCCTAATGTCTCATAAGATGTTTGATTTCTTTCCAGTATTGCAATTCAATAAATCACTGGGAAATGGGATCATGTCTCTGTTTCCAAATGAGATGATGCATTATTCAGGTTACAAAACACTAGAAACTACAATAATCCAAGAGACGTAATTGCTATGATAGGAAGGTTTTCTAAATATGGTAAAGATCAATTTATTTTATAGCAATGCATGTAATCTCTCAAAGAGAGATTGCTGTGTTAACAGGATGAGATACAAAGATTTATTACCAAGAATCATGTGTCCACTTACATTAACAAAGCCGACCTGGTGTCAGTCCAAATATCAATAAAGAGCCTTGAAACTCTTTAAATAAGTTCCTTTTCATGTCTTACTTCAAAGAACATGGCTGCCTTTTCTGTTTTAAATGACTCTTGGAAACATTCTACTGCTTTCCACAG
Seq C2 exon
GAGTTGAAAGAGAAAATGGACGAGCTACTGCCCCTCATCCCAGTGTTGGAGCAGTACAAAACCGACGCAAAGCTCATCACGCAGTTCAAGGAGGAAATCCGGAACCTGTCTTCAGTCCTCACTGGGATTCAGGAGGAAATCGGTGCCTATGACTATGAAGAACTGCACCAACGGGTCCTCAGCTTAGAAACTAGGCTTCGTGACTGCATGAAAAAGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017969:ENSRNOT00000024243:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=FE(50.5=100)
A:
NA
C2:
PF123083=Noelin-1=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]