MmuINT0113082 @ mm9
Intron Retention
Gene
ENSMUSG00000027965 | Olfm3
Description
olfactomedin 3 [Source:MGI Symbol;Acc:MGI:2387329]
Coordinates
chr3:114799794-114804941:+
Coord C1 exon
chr3:114799794-114799949
Coord A exon
chr3:114799950-114804721
Coord C2 exon
chr3:114804722-114804941
Length
4772 bp
Sequences
Splice sites
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
3' ss Seq
CACTCTATTGCTTTCTCCAGGAG
3' ss Score
8.58
Exon sequences
Seq C1 exon
GTACAGAATATGTCACAGTCTATAGAAGTCTTAAACTTGAGAACTCAGAGAGATTTTCAGTATGTCTTAAAAATGGAAACCCAAATGAAAGGGCTGAAGGCCAAGTTTCGGCAGATTGAAGATGATCGGAAGACGCTAATGACCAAGCATTTTCAA
Seq A exon
GTAGGTGTGAACCCTGCAATTTTGACAATACAGCATTGTATACAGGTAGCAAGTCACTAAGTTGGAAATAACTATTCCTGTGCCCATTCACCAAGTTAAAGACTCACTGGAGATACAATTTCTTGTCACTAAATAGTAACCATCAGCAAGCAGCCAGGAACACATAGAAGATTGTTAATTTTTAAAAATTGGTGCCCATCCGAGACATGTGGAGTTTCTGGGTAGAATTACAGGTACTTTATTATCCAAGACAAGAGGAATTTTCCCCAAGAAAGTTATTAATTATGCCATCGAAGATTTTCCTAATAAATTTATGCTACTGTGAAGATGTAAACTATTAAAGGAAGCAAAATACCATTGATGACAGGATCTTTAAAAGGATATTTTTCAAAGTTTATATAAGTGATATCTTTTTAAAAGATTTTAGATGGTGTGATGCTAATTATCCAGAAACTAGAAATGAAAAAAAATGTGTTGAGCATACTGGGAAGACTTTATTAATGATATATGACAGAGTCATTTATTTAAAAAAAACTTCTTAGTCTTTTAATGTCACTTGAGCCTTTATTAAATAGTATTGCTCTGTCATAAAAAGCATAGCACTGAGTTTTCAACAACTTTAAGGTTGTCCATAGATATTATATCATGTCCCTCTATTAATTAGACTATGATGTTCAATCTCAGAGTGAACGGAGTGGGCTCAGTTCAAGCTGCGGTCACAGGTTTGAGCATACTGGAAAAAATATAAGGAGTTGGTCAGAGACAAACAAGATCTTTGAAAGGCACATTATAATGAGCTAGAAATCATCATGGTTTAGAATTTTCTCTGTAGCCTCTGGAACGTCAGAGCAGAGGTATAAATGACAGACATCAATACATGTCAAGTTTCAAAGGAAGAAACAGGACAGAAAATTTGAGGATATTGACAAGAGAGAAAGTGGAAGCGATGAGCCAAGGAATCTGAGCTGAAGAGAGACTTAAACAAAACAGAAGTTCTTGCAAAAGGGAAAGGAGAATAGAATGGGATAGAGCAAGAAGACACAATAATTACCAACTTCACCAACTCTCCTGTCTCTACTACTTTAATTACTTGAAAATTATAGGAAATAAATGTGTGAGCTAGATAAACAGAGAAAATCTGGGGAAAATGATAAACAGGGAGTTGCATAAAGTTCTGGACCCCATCCATGTTAACCAGAATTCACTGATACCATATACACTCTGGGAGACAGGACCACGCCCTTCCTGGACAAATGAAGCACAAACTCTTCCCAGGAAACTCAACTAAGGGGAAAGTAGACTGGGCTCAAGGGAAGCAGCAGCAGAGGTTAAGAGCACAAAGGGAGATTCATTTGTCCACTGAAGATATGCTGAGGAATTAGAGGATTTGACAGTGTTCAGGAAAACCACGTTGTCTGTGGCCTTCTCTTCTGAAATACGAAATTACAGGGAGGATCTAGAAATTGGAAAGAGTTCTAATGCCCAGAATTGGGATATAGCTGGTAAAGCAACAGTGTGAATCTGAAACTGGGCCATTATCAAAGGAGAAAGTTGTGTATACTAAGTGGAGGAGAGAAGCACTCCCCGAAAGGACAGCAATAGGATGGCAGGAACTCATACTGTACATCAGGAGACAAAGTAGTGAAAACTTGGTAGAATCCAGGTACTCGTGGAAGCTTCCCTGGGTCCATAGGACTGGGGATGCATCTGTAGGAAAAAAGAAAGAAACCTGAGAGAAGCCAAAAACACATTTGCCCTAGTGTATATATGACTTTCCCTAGTGAAAGCCATGGTGTCAATTTGAAAATTGAATTTTTGGAAAATACCACGTAATTATGATTTTGATTTTTTTCATAGTTCATATGATAATTTCAAATATTTGTCGGAAATGTCAAAATCTGAATATCAGTTATCAAAATAATGACCATTTTTCTGAACATACATATTCACAGCAGAGTTCTGAGAACTTTTGTATATTAAGTGGTTCAATCATCATACTTACCCAACAAGGCAAGCCCTGTTTTACTTTTTTTATCCCCATCAGATAAGCTAATGCACAATGAGTACATTTCCTAGTACCTGATTGACGATTCAGACTGACAACATCTAGCTCCAAACCTACAGGTCTGGACTGATAAACTAGGTCTTTGAATTAAAATTAAAGTAATAGGGACTGGAGAGATGGTGAAGTTGGAAATTATTGTTAATACAAGCATAAGGACTTGATTTCTGATCCCCAGTATGCATGAAATGGGGACAGAATTTGGGAGAAGGCACACTGTTTCCTCAGCATTGGGGAAGTAAAAGCAGATAATCTCTGAAGCTTGTTCAATAATGTAGCCTAATAGGTGAGCTCCTGGAAACATTGAGAGACACTATCTCAGGGGGATAAACTATGAGTACAGGATGATTGAGGGAGGCAACTGAAATCAACCTCTGGCCTCCCTAGTGGTGAGAGTACACACACACACACACACACACACACACACATGTATACATGCATGTACACACACAAAGTCATGCAAAGTCACACACCTGTATATTTACACTTATGCCACACACATCCACACACATAGGCACACACACATATAAACATACAAACAAGAACACATTCATATACACACCAACACACATGCCAAAATTCCCACATTTGTGAGCTCACTCCTCTACACCCAAATCACAGTCATAATTAAGTGTCTTAAACATGATTATGAAACTCATTTTCTCCAAGTTACAGCATGAATCACATTTCCTTCTAGATGCCGAGATAACATATGCTAGAAGTAGAATGTTCTAAAACCAAGCTTAAGTGGAAAATTACTCTCTATAAAAACCTCTCTGCTGCTGCAAAACTTTCATCTCATGACAAACACTTTTCCTTCTGTGATCTTTCAGGTGGAAAGCTTAGCTAGCCATCATACTGAGATCAACTGTTGTTGGCAAGGACTCTGGTGATTGTCAGAGCTATATAGTTGAAAGTAAAATTCTAGAAGGTATCAGCAAAGCCAGATTTATAGTATTGTATTTTTAGTTTTATATATATGATATATACCAGGGTTCTCAACAAGTGTCCAAAGCTTCAAAATTGATTGTCAAAAATCTAAGTAATTTTTGGAAAAGTTAAAATATTTCTTAATTCATCAAAGAAAAGAAACTTCCAAAACTTTGACATCAGATTCCTCCTTTGAATACACACACGCGGTAAAATGTAGAGTGTTCGATTGTGGCAGTTATTATAATTTGCAGCAAATCGTATAAGCAGAACTCTTATCATTAAAATTCTAATGAAACAATTGTATCTCCCTTTAGGGGTACTGCAAGATGCTTAAACTAATACATTTATTTCAAGATGGACCTGAAATGAGCAAGCTCTGCAGTTCTACCTTTTGACTGCAAACGTTACTAATCTTTTTCATTACTGAGATTATTTTAATCATCTCATTCAACTTGTACTTACAGAGAAATTCAAAGGTTTCCAGGTTTGAAGAGCATGTAGAAGTCTCCCCACCAGAAACACAAGCCCATTAATCAGGGGAGCGATGGGAGCTTCTGCTACTCGAATGTATTTATAGTAATAACATTTTCTAAGTGTAATTTAAAAATGCAATTTTCAGCTCCTTAAATAATTATACAGTATGGCTTCTGACAGAGCCTATGGGTTATTCTCAAAGGATCATTCTTTGGAACTCTTTCAACAGATTATATCATCTGCAATAAATTCACAGTTAACTCAAGCTCTTGCAATACTTTTGTTGTTCATATCTACCAAGTTAAAGGGAAAGAAGTATGCATGACAAGTGCAGAAGTTGGAGCTAGAAGTGCAGGTTGTGTCCCAGGCTTGTGATGACGAGGAATGGGGTACACTGACAACATACATTGCTCGGTCCCTTGACAAAAATCAGTGTTTTAATGTTGAACAGCTCTGTGCAAGTGGCCCAAATGTTATGTAAGTTATGCAACTTGTTCTATTAAGGAGTTAATTCACTACATGGTGGGTAAGTAACTCTGCTTTCTGCAATGGCATCTTAATTATCTATACTAGAAGACAAATGGACACTTAGTCTAGTTAATAATTCAAAATTGAAACAGCAGCATACATCTCGTCAACTTTTGTGAAGCTTTGTATGATTTATCATGCAGTTGAACTTACCTTCCTAATAAGTTGTCCTAAGGTGACTATTCCAAAGGACAGAGAACACCTGAGCACAAATGAAAGACAAAAACAAACACCAAAAACACCAACAACTGTCCCTAGAAACAAGGAGTCAAGGAAAAAGTTGATCTAGAATTGAGAATTTTCCTTTAGATAGTTCTATGGTGGAGGTATTCAGTTGTGGAATAATTAATTTTCTCTAATGAATAAGATCTTTTATTTTTTTCCAGTATTGTTATTCAATACATCATTAGAAAATGGGATCATGTCTCAGTTTCAAAATGAGATGATGTATTATTCAGGTTATAAAATACTGGCAGAAAGTAAGATAATCCAAAAGACCATAATTGCTAACTATGGTAAAGATCAATTTATTTTATAGCAATTTATGTAATCTCTCAAAAAAGAGGTTGCTGTGTTGACAAGCTGAGATAGGAAAATTTATTACCAAGAGTCTTGTGGCCACTTACATTACCAAAGCCTATCTGATGTTACCCAAAATATAAATGAAGAATTTTGAAGCTGTTTTAATAAGCTCCTTTTCATGTCTTAATTCAAAGAACATAGCTGCCTTTTGTGTTTTGAATGACTCTTGGAAACACTCTATTGCTTTCTCCAG
Seq C2 exon
GAGTTGAAAGAGAAAATGGATGAGCTACTGCCCCTGATCCCAGTGTTGGAGCAGTACAAAACCGATGCAAAGCTCATCACACAGTTCAAGGAAGAAATTCGGAACCTGTCTTCAGTCCTCACTGGGATTCAGGAGGAAATTGGTGCCTATGACTATGAAGAACTTCATCAACGGGTCCTCAGCTTAGAGACCAGGCTTCGTGACTGCATGAAAAAGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027965-Olfm3:NM_153157:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=FE(50.5=100),PF045137=Baculo_PEP_C=FE(45.9=100)
A:
NA
C2:
PF123083=Noelin-1=PD(0.1=0.0),PF045137=Baculo_PEP_C=PD(44.1=66.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: