HsaINT0118167 @ hg19
Intron Retention
Gene
ENSG00000118733 | OLFM3
Description
olfactomedin 3 [Source:HGNC Symbol;Acc:17990]
Coordinates
chr1:102290582-102296383:-
Coord C1 exon
chr1:102296228-102296383
Coord A exon
chr1:102290802-102296227
Coord C2 exon
chr1:102290582-102290801
Length
5426 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CAATAGGCTGCTTTTCACAGGAG
3' ss Score
2.59
Exon sequences
Seq C1 exon
GTTCAGAACATGTCCCAGTCTATTGAAGTCTTAAACTTGAGAACTCAGAGAGATTTCCAATATGTTTTAAAAATGGAAACCCAAATGAAAGGGCTGAAGGCAAAATTTCGGCAGATTGAAGATGATCGAAAGACACTTATGACCAAGCATTTTCAG
Seq A exon
GTAGGTTTGACTTCTGCAATCTTGTCAATCCAAATCAGACATGGAGTGGGATGGACAGCAGTGGGGCACTCAGCTAGAAATGAATGTGCATTGGCCCATATGTGCAAGGTAAAAGACTCATGGGGGATTTCAGTCATCTCTCCACTGAAACTGACCATTAGCTGGTAGGAAGACATGGAAGTCTTGCTATAGAAAAAGCTTCATTCTTGTAGAGTTTGGTGGAGTTTCTGAAACAAGGGAAATTTCCCCAAGGAAAATTAATAATTAAATTATAAATGTTTCTCTAATGGTTTTATGCCCTGCTAATATGAAGAAAGATGTAGATGATATAAATTATTTAAAGAGAAAACTATGCCATTAATATGAGCATGTGGAGAGAGTTGTTTCATAAATTTATCCAAATAAAGTATTTTTCTAGATTTTAAGTGTTGTATTGGCAATTATTTACAAATACTGAAAATGGAGAAAAAAATCATGCTATGTCAACTTTTGTTAACTATATATGAAAGAGTTATGAATTTTAAGAAAAAACTCGGCCGGGCGTGGTGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCCGAGGTGGGCAGATCACAAGGTCAGGAGATTGAGACCATCCTGGCTAAACAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAATTAGCCGGGTGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGGATGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGACAGCGCCACTGCACTCCAGCCTGGGCAACAGAGAGAGACTCCGTCTCAAAAAAAAAAAGAAAAGAAAAAACTCTTGGTCTGCTAATGCAATCTCAGCTCCCATTAAAAGTAAACCACTTGCCTTACCTAGGCATAGCACATAGTTCATAAAACACTGTGGTTGCCCACTTAATAGCCTCTGGTTTTCTTGTCAGTTAGGAAGTGAGATTCACTGCTGATGTTGAGGGAGTGGATCTGAACTCAAGCCCTTGGGCAAGGAAAGGAGTGCTTCCTACACATAGTGGTGGCTGGTGGGGAGCTAGTGAGGAACATGTAACCGAGTCTCTGCATAACACATTTGAATGTGGCAGAAAGTTTCATGGTTTTGTAATTTTCTTCAGTGGTACTCCAGAGACTGAGTAGAGAGGTATAGAAGAACATTACACCCTGAATTGGTTTTAAAGTTTTACCCAGACGGTCACAAAGGAAGAAAAAGAGGGCAAGAAAGTTGAGGGTATTGAAAAGAGAGGGGACTGAAGTGATTAATCATGAGGTTTAAATTGAAGAGAGAAGTACACAAAACCAGCAGGTTAAGTAATTAGGACAAATTAGAGCAAGATTTAGAATATACTTAAATTTAAAGATTATTGAAAATGAGAGTGTGAGTGAACTGGATAAATAGGAAACTTATGGATAAATGGTAAACAGAGAAGAATATGAGGATGAAGAGCAAAAGAATTAATTTTAGCCAGTATTTATCGAGCACATACCATATACAAGGTGCGGTTGGCCCCTCTGCTGGATGTATTATACGTAATCTGTCTTCTATGAAAGACAACTAACAGGCAGGTGAATTGATGGTGAATAGAGGCATAAACATTACTTATGAGCACAAAGGGAGGAGAAATTAATTTTGATTTAAAAAGACCAGGAGAAGAGCTGGTTTCGTACTAGTGACCCTACCCCTCCACTATTAAATTATAGGGGGATCAAGAAAACCAAAAGATTTACTATGTCAATTTTCAATTCTCAGGGTTAGAGTGTAGATGGTAAAATAATAATGGGAACCCAATGCTGAGGTCATCGGCAAAGTAGAAAATAGTAAGCTGGCACCTTAGGTGTGGGAAGAGCATTCCCAGAAGGAACTAGTCAGGAGGAGAGGAGTTCAGACTGTTTGGCGTAGATGGACAATGCAATGAGAATTCTGCAAAGCCAAAGGACAGCTTGAGAGTGTCAGGGTTGACAGGGCTGGGGAATGCATGATGAAGCATGTTCATCTTTGGGAACTTTTGCGAGAAGACAGGAAACTAAGAAACAAAAAGGATACAAAATTGAGATAAACCCCAAAGAAATAATGTACCTAGTCCTATAAATTGCCTAGCAGCAAATCAGCCAGGCTACTAATAAGAAAACAATTTTCAGGCAGCAGCACCATGTGACATAATGGCTTGGATTTTCCTAGTTCATGTAATCCAAGTATACGCTGAAGTTATATGTCAAAATCCAAATAACAGTAATGATAATAACAATAATGATTTTTCAGAATATTATACATATTCAAGGTATAGTTCTGAGCACTTTCAGTATATTAACTGTATAATGCTCGCAACAGTCTTGTAACTCAGGCACTATTTTCATTTCCATTTTAAAGATAAGGAAACTGGAGCACAAAGAGTGTATTGGTCTATTCTCACACTGCTATAAAGATCTGTGCTGAGACTGCGTAATGTGTGAAAGAAAGAGGTTTAATTGACTTACAGTTCTGCATGGCTGGGGAGGCCTCAGGAAACTTACAATCATGATGGAAGGGGAAGCAGTCACCTTCTTCACAAGGCAGGAGGAGAGAGAGAGAGACAGAGAGAGAGAGAGACAGACAGACAGACAGACAGAGAGAGAGAGAGAGAGAGAGAGCATGAATGCAGAAGTACCACACTTTAAAACCATCAGCTCTCATGAGAACTCACTCAGTATCAGAACAGCATGGGGGAAACCACCCCCATGATACAATCACCTTTCACCTGGTCCCTCCCAGACATATGGGAATTACAATTTGGGATAAGATTTAGGTGGGGACACAGAGCCAAACCATATCAAAGAGGTTGAGTAATTTATCCAGAGTCGTATATCTAATATGCATGAGAACCAAGATTCAAATTCAGAAAGTCCAATTCCAAACTTGTACCTTCTAATACTAATGCTGCATTGCTTCTCCAAGTAGACTTTAGGTCTCTGAATTACAAATAATAATAATTAGGTGCTCAACATATATTTGTGGAGTTTATTTATTTCTTGAGTCCTACCATGAGTTGGATTTTGTTCTAGGTGCTAGTACTATACTTGAAAAGAGGAAATGGAACGTTCCAAAGTAAATTCAATATTGAAGAATACTTTTTAAAAAATCTTCCTACCCTGTCTCTACTAAAAATACAAAAACTTAGCTGCGTGTGGTGGCAGGCGCTTGTAGTCCCAGCCACTCGAGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGTGGAGTTTGCAGTGAGCCGAGATCGCGCCACTGACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAATTCTTCCTCTGTTACACAATTTCCATCGTATCAAGAATGTTAAGTAGGTTTTGTCTTCTACACTTTTTCAGATAGAAAGCTTATGCCAACTACTATACTTGAGATTGACATTCTTATATGAAGAGATTGATGTTGGCTCTACTCTAGCTAAGAACTTGGATGTAAAAGCAGCATAGTAGAAAGTGAGATTCTAGAAGAGATTAGCAAACACAGGTCTATGCTATTCTACTGTAATCTTTTAAGTATTTGATATGAGCATTGGGTGGACTTTCCAATGCTCTCATATAAGTTTTCAGAGTTTCACAATTGATCGCTAATAATCAAATTATGAATTGTTGAAAAGATTAAAAAATATAAATATCTAGTTTTGAATTGAGGGAGAAGAAAAGCTACCAACATTTTGACATTGAATTGCTCTCTTTTAAATATGCCCATAGTAGAATGTAAAACCTTTGATTGTAACAGTTGTTATAATGTGCAGAAAATGATAACCACAGAAATATTTTCATTAAAATCCTAATGAAACAATTGTGTATTCCTTTAGGGATACCACAAGATACTTTAATAAGTCTATTTCCAAATGAGCTGACAAAATGAGCAAAGCACTGCAATTCTGCCTTTGACTGTGATATTTATGAATCTTTCTCATTATTAAGTCTCTCCTTAGCCTCCCACTCAATATGTACATGTGAACAAATTCAAAGATTCTGAACTTACAGAGCAAGTGGAAATTTCCCCACAAGAAACTCAAACCCATAAATCAGGGCAGCAATGGGAGCTCCTGCTATTTTAATGCATTTATAGTAATAACATCTCCTGAATGTAATTTAAAAATGCAATTTTCAGCTCCTTAAATCAGTTAGTGTACAGTATAATTTCTGACAGCATCTATGTATTATTCTCAAATAATCATAAGAGGGACTGCTCTTTCCACAAATGACATTATTTCCAATAAATTCACAATTGAATCAAACTCCTGAAATAAATAAAGAAATATTTATTTATTTTCACTACTATTTTCACTACTATGAAGTTAGAGAGAAAGAAGTAACGGTGACATGTCTAGAAACCCAAGGTGAAACTGTAGGCGTGCTTCAGTCCTGTTACGGCTAGGGGTGAGGGATACTGCTTGACAACATACACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGACGAAAGTCAATGCTTCAGTTTCAAACAACTCTGTGTAACTGGCTCATCTATTACATAAACTACACACCTTGGTTTCTTAAAGAGTTAATTCGCCACATGGGCAAGCAATTCTGCCATACATAACGACCTTTAAATTATCTATGGTAAGATAAATGGAGTCGAAGTACAGGTAATAATTCAAAATAGTAAACAGTAACATACCTTTATTTGAGCCTTGGGACACTTCATCTGATTTATAACACTTACTGAACTTACCTTCATAATGAAGTTGTGCTAAAATTGATATTTAAAAGTTCAAGGAATACCTGAGCACAAAGGAAAAACAAAGTTGGTTGATGGCCATGATGGAAAAATTCTAAGTGTCAGAAAAAAGCTGATCCAGAGTCCACAATTTTCTGTATGTGCCCCATAACATGGATACTTAGTAGGTGGATGATTAGACTCAACTGAACAATCATAGGGTATTGACCTATTTTCAATCACTTTATTCAAACTTAATTCATAATTAGAAGATGGATTCTGCTTATATTTCCTAACTAGATAATACATTGTTCACTATATAAAATGTTACCAGAAAATGAAATAGTATATAGTCCTAGTTTCTACCATAGGAAGTTTTTCTAATTATGATAAGGATATATTTGTTATAGAAAACTAAGCATTAAAGAAAGATTCTCATATGGAAAAGCTGAAATAAATGGACTTACTAGTAATAATCACATGACCGCTTAAATTTTCACAAAATACCTAATTTCAACCAAAAATCAATAAGAAATGTTGAAGCTGTTTTAATAATTTCCTTTAAGTATCATAATAAAAAGAACAGAGCAGCATGATCTGTTTTAAATGACTCTCAGGAACAATAGGCTGCTTTTCACAG
Seq C2 exon
GAGTTGAAAGAGAAAATGGACGAGCTCCTGCCTTTGATCCCCGTGCTGGAACAGTACAAAACAGATGCTAAGTTAATCACCCAGTTCAAGGAGGAAATAAGGAATCTGTCTGCTGTCCTCACTGGTATTCAGGAGGAAATTGGTGCCTATGACTACGAGGAACTACACCAAAGAGTGCTGAGCTTGGAAACAAGACTTCGTGACTGCATGAAAAAGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118733-OLFM3:NM_058170:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=PU(96.0=98.0),PF045137=Baculo_PEP_C=PU(43.7=91.8),PF093215=DUF1978=PU(34.5=59.2)
A:
NA
C2:
PF123083=Noelin-1=PD(0.1=0.0),PF045137=Baculo_PEP_C=PD(54.4=75.7),PF093215=DUF1978=PD(63.1=71.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)