RnoINT0105267 @ rn6
Intron Retention
Gene
ENSRNOG00000020519 | Olfm2
Description
olfactomedin 2 [Source:RGD Symbol;Acc:1309741]
Coordinates
chr8:21688840-21689474:-
Coord C1 exon
chr8:21689328-21689474
Coord A exon
chr8:21689060-21689327
Coord C2 exon
chr8:21688840-21689059
Length
268 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CATTTTCTCCTGGTGAGCAGGAA
3' ss Score
3.87
Exon sequences
Seq C1 exon
GTCCAGAATGTGTCTCAGTCCATGGAAGTCCTTGAGCTAAGGACATACCGGGATCTCCAGTATGTTCGCAGCATGGAGACCCTCATGCGGAGCCTGGATGCAAGGCTCAGGACAGCCGATGGGTCAGTCTCAGCCAAAAGCTTTCAG
Seq A exon
GTGGGTTCTTCTGAGTTCAGCTCTGGGGTCTAGAGAGTGGTTGGAGGGTTTGGGGGAGGTGCTGCGGTAACAGTGACTGCTGTGAAAGCCAGAGGACCTGAGTTCCAAGGGCGGGGCCGTATCTGGGAAGAAACGAGGAGTTGGCTGGGCTCTGGGGTCCTGAAGGCATCCATTGGCAAGGGATGAGTATTGTATCCAAGATGCTAGGATGAAGATAAGGGTCAAGTGTAAGGGGTCGGATCGGCGGCCATTTTCTCCTGGTGAGCAG
Seq C2 exon
GAACTGAAGGACAGGATGACAGAGCTGCTGCCCCTGAGTTCAGTGCTGGAGCAGTACAAAGCAGACACACGGACCATTGTGCGCCTGCGGGAGGAGGTGAGGAACCTCTCAGGCAACCTGGCTGCCATCCAGGAGGAAATGGGTGCCTACGGGTACGAGGACTTGCAGCAGCGCGTGATGGCCCTGGAGGCCCGACTCCATGCCTGCGCGCAGAAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020519:ENSRNOT00000027829:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=FE(49.0=100)
A:
NA
C2:
PF123083=Noelin-1=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCCATGGAAGTCCTTGAGC
R:
TGCAAGTCCTCGTACCCGTAG
Band lengths:
299-567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]