RnoINT0011415 @ rn6
Intron Retention
Gene
ENSRNOG00000039906 | Abo3
Description
histo-blood group ABO system transferase 3 [Source:RGD Symbol;Acc:628609]
Coordinates
chr3:5123365-5126901:+
Coord C1 exon
chr3:5123365-5123499
Coord A exon
chr3:5123500-5126213
Coord C2 exon
chr3:5126214-5126901
Length
2714 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
3' ss Seq
ACCCCTGTCCTCCCTCATAGGTA
3' ss Score
12.38
Exon sequences
Seq C1 exon
TAGGAATGATGTTCTTGTCTTCACTCCTTGGCTGGCTCCCATCATCTGGGAGGGGACCTTCAACATCGACATACTGAATGAGCAGTTCAAGCTTCAGAATACCACAATTGGACTGACTGTGTTTGCCATCAAAAA
Seq A exon
GTAAGCAGCTGGTGTTGGAGAGATGGCTAGTGGGTAACACACTTGCATCAAGGGCAGAAGGAACTGAGTTTGATCCCTAATGCCCTTATACTAGCTTGGCATGGTGGCATGTACCTGTAATTCCAGCGGTGGGGGTAGAGAGAAGAGAAAAGTGGATCCAAGTCACTTTCTGGACAGACCTGCCAATTAGTGGGCTTCAGAGTCAATGAAACAACCATGTCTGAAGAACAAAAAAGGATGAATGACAGAAGTCACCCTTGGCCCAAGTCAACCCCTGGCCTCTACATAAATACATAGAAAAGTAAATACACACACACACACACACACACACACACACACACACAGTCACACTCACGCAAGCTCATGTATAAATATATACACACAATGGTCAGGGTGGCAGCACAGGCATACCAAGCTCCAAGCTTCTTGTATTTAAGATGCAGTGGGTGTTAGGTTTGTTCAGCAAATCATCTTCCTGAGCTTGAGTGTACTCACAGGTGAGTAAATGAAGATCTTCCTCTTTCCTGAACCCAAGGCCAGCCTATCCTTACCTCTATGTTCTCAGCCAGGTGCCATTTGAATCCTTCACACTTAAGGTGGATCTGTAAATAGAATTCCAGGGGCTTTTCTTAGCCACCTTTACTCTCAAATTACTGTAGGGTGTTTTAAAGACACTGACACTTAATTTTTATTAACAACCTGAAAGCACTAAGCTGGGCTGTCCCTGAACTATTCTAACCAGATTATTTGGCTCATATACAGCCAAATGCTCCACTACTTGTTACTTGCCATCTCTTGTTGCACCGGCTCTGCTACATGTGTGTCCTCATGTCTTCTCTCTCCCATCAAAATTTCATGGTGAACCCTCTTGATTGAGTCACATGGTCTCTGCACCTTCTTGTCTGTTCATCTTTCTTCTTCTTAAGACCCCAGACAGCAATTGGAGGTCCTTTCCTGTTCTCTTCTCCTGCCCAGCGATTGTCTGATCAGCTCATTCTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGTGCTCTACCACTGAGCTAAATCCCCAACCCCTGATCAGCTCATTCTTTAACCAATCATGTGATTGAAAACTATTTTTACATACCATTGAAACTATAGATGGTTGACCGAGCCATAGTCTGGATTGCAACCAGATGACTGGAAAGAGAAATCAGCCTCTGAATACACAGTCCAAACCCCCCTCCCCTTCCCCAATATGTATCCTCATCTCCAAGGTTGGCAGGGAGGAACAAGTTGCAAGCAAGTGACCTGTGGTCACTGGTGTCTTCAGATGCAGGATACATGGATAGGAAGGGTTGGTACTGTGACACCCTTAGATTTTGAGTCAGGCTGACTTTAGAGCACAGGCAAGAAACATGCCCTGTTGGAAGATGTGAAAAGCAGGATGGTGCTTTTACTGCGTGGAGGGCTGTGGGGATTAAGAGAAGCCATTTGTGCTGCTTGTATATGAGAAGGGCTTTGTGCTTCCCTGCAGTGCTGGGTGAGGTCTGTGATGAATAACTCTGAGGCCTTTGTATCAGTCAGACTTAAGAGAAGTTAGGGACTTACCCGGAGAAATATTAGGTAACCTGAGAATGCCTGTGGCCCCTAGCAAGAGAGTCCTTCATAGTAAGAAGACATAACTTTTTCTTGGTGCTGCTGGATAAATGAGCAAGAGACCTGTCAGGTGTAGGTAGGAGTCTTGTCTATAAGAAGAAAGCCTCTGAGGGGAGTAGCTGGGAGCCCCATGGTGGCCTTTGCCCAGGGATAACTGCCACTTGCCTATTTCTGCCACTGAAGTGGGTAGGGCTTTGTACATTTTCCAGGTGATGTGGAGCCCTGTTTCCATGGTGGAGACATGGGGCACTGGCCATGATTGAGGGAGAGGCAGCCATCTGAAGGAAATTAAAACTTCTTGGGTTTGGAGATGACTTAGAACCTGGGTTATAAGCCTTTTGTACTTGGACCTGAGGGTTTGGTTTAAGCGTGCCTTTCTTTCTAGGGTACCTGACTTTCTGCCTTCTCTACTCTGTGAGACTGATTCATGCTTTGGTGGGGTTCATGTGGAATGATTCTTAGGGATATAAGTGAGTTATTGAATGCCTTGTCTCCAGGAACCTTCAATTCTCTGATGAGGAAGTCTGGGATATAGAGACCTTTTGCTTTACTGAGATAGGGTGCTGTAGAGTAAACAAAAGAGGGGTGCAGGTGCCAGACCCATAAAAATCCATCCAATTTCTACAAGGGTTTAAAAGTGGAACTGTATGAGTATAGGCTCTGCTCATGTCAAGGCAAAAGTGTAAGGTGTGAAATGTCATAGGATGGGGATGTAATTATTGGGCTAGGGTGACAGATTCATGGAGAGATGGTCTGCTGAGGAGTTGCCAAGACAAGAGGTACCTGTAGGGAATCTGCCTGGGCTGGAGTTAGCCCTGCTGCCTGGCTGAAAGCTCCCAGGACTATCAGCTTTCCATGATAAGATGGGTTGCTGATGTTGCACCCTTCTGCAGAAAAGCAGGGTGAGGCTAGTATAGCCTGAAGACTGATCAGGATAGCTATAAAGTGGAAGGATCAAAGGATAGCCATGGTTTCCAGAGCCTGTCCCTATGTACCATTAATTTTTGTTTTAGCTGTGTTAAATCTCTCCATACACCCCTGTCCTCCCTCATAG
Seq C2 exon
GTATGTGGTGTTCCTGAAACTCTTCCTGGAGACGGCAGAGCAGCACTTCATGGTGGGACACAAGGTCATCTATTATGTATTCACTGACCGGCCATCTGATGTGCCACAGGTGCCCCTGGGCGCAGGGCGGAAGCTGGTGGTGCTAACTGTGCGCAACTACACCCGCTGGCAGGACGTGTCCATGCACAGGATGGAGATGATCAGCCACTTCTCAGAGCAGCGCTTTCAGCATGAGGTGGACTATCTGGTGTGTGGAGATGTGGACATGAAGTTCAGTGACCACGTGGGTGTGGAGATTCTCTCAGCGCTCTTTGGCACCCTGCATCCTGGCTTCTACCGTAGCCGACGAGAGTCCTTTACCTATGAGCGCCGGCCAAAGTCTCAGGCCTACATCCCCAGGGATGAGGGTGACTTTTACTATGCAGGGGGTTTCTTTGGGGGATCAGTGGTGGAGGTGCACCATCTCACCAAGGCCTGCCACCAGGCTATGGTAGAGGACCAGGCCAATGGTATTGAGGCTGTGTGGCATGACGAGAGCCATTTGAACAAGTACCTGCTATACCATAAGCCTACAAAGGTGCTGTCCCCAGAGTATGTGTGGGACCAGAAGCTGCTGGGCTGGCCCTCCATCATGAAGAAGCTGAGATATGTGGCCGTGCCCAAGAACCATCAGGCGATCAGGAACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039906:ENSRNOT00000006553:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.004
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(13.5=100)
A:
NA
C2:
PF034148=Glyco_transf_6=PD(68.5=99.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]