HsaEX1001522 @ hg38
Exon Skipping
Gene
ENSG00000236197 | AC002429.5
Description
NA
Coordinates
chr7:95108867-95214332:-
Coord C1 exon
chr7:95214185-95214332
Coord A exon
chr7:95174947-95175089
Coord C2 exon
chr7:95108867-95108941
Length
143 bp
Sequences
Splice sites
3' ss Seq
CTGACGGGATGTCATTTCAGATT
3' ss Score
4.54
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
AGTCCTGCCAACAGCTGTGAGTGAGCATGGACGCAGATCCTCTCCCAGTGGAGCATTTGGATGACCACGGCTCTGGCTAACACCTCACTTACAGCCTTGGGAGAGATTCTGAGTCAGAGGCATCCAGCTAAATTGACCCACAGACACG
Seq A exon
ATTTTAGGTTACAAAAAGATGGCAGATTGCATCTTGGGCACTCTCTTGTATGACTTTTTGGAGAAGCCAGTTTTCATGTTGTGAGAGGCCTGGCAGAGGGGCCCAAATGAGTTCGCTGGGAAGCGGATCACAGAAACCATGAG
Seq C2 exon
GTCCCGGTTTATGACTGCAAAACAATGGTTTAAACAGTATTCATTCTGGAACATCACTCAATTTCACTAATACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000236197_MULTIEX1-2/3=C1-3
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=0.176 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCTGCCAACAGCTGTGAG
R:
TTAGTGAAATTGAGTGATGTTCCAGA
Band lengths:
218-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains