HsaEX1029169 @ hg38
Exon Skipping
Gene
ENSG00000158528 | PPP1R9A
Description
protein phosphatase 1 regulatory subunit 9A [Source:HGNC Symbol;Acc:HGNC:14946]
Coordinates
chr7:95120712-95161971:+
Coord C1 exon
chr7:95120712-95120832
Coord A exon
chr7:95159627-95160000
Coord C2 exon
chr7:95161867-95161971
Length
374 bp
Sequences
Splice sites
3' ss Seq
TCTGTAATGTGCTTCTTTAGAAA
3' ss Score
7.58
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ATGAGGATGGTCTTGGTATAAGTATTATTGGAATGGGTGTTGGAGCAGATGCTGGACTTGAAAAGCTGGGAATATTCGTCAAGACAGTAACAGAAGGTGGTGCTGCTCAACGGGATGGCAG
Seq A exon
AAAAAATATGACTCGGGCCGACCGTGGTGGCTCACACCTGTAATCCCAGCATTTTGGGAGGCCGAGGCGGGAAGATCACAAGGTCAGGAGTTCAAGACCAGCCTGACCAACATGATGAAACCCCATCTCTACTAAAAATACAAAAAAACATTAGCCGGGCTTGGTGGTGCATGCCTGTAATCCCAGCTATTCAGGAGGCTGAGGCAGGAGAATCTCTTGAACCCGGGAGGCGGAGGTTGTAGTGAGCCAAGATCACACCACTGCACTCCAGCCTGGGTGACAGAGGGAGACATTGTCTCAAAAAAAAAAAAAAAAAGAAAGAAAGAAAGAAAAAATGTGACTCAAATATAGCACAATGCTAGGATTTTATAAAG
Seq C2 exon
AATACAAGTCAATGACCAGATTGTGGAAGTGGATGGAATCAGCTTGGTGGGTGTGACACAGAATTTTGCAGCAACAGTTCTCAGAAACACCAAGGGCAACGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158528_MULTIEX1-3/4=C1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.063 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=FE(47.1=100)
A:
NO
C2:
PF0059519=PDZ=FE(41.2=100)
Main Inclusion Isoform:
ENST00000433360fB23229
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGATGGTCTTGGTATAAGTATT
R:
GACGTTGCCCTTGGTGTTTCT
Band lengths:
223-597
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains