HsaEX1001854 @ hg38
Exon Skipping
Gene
ENSG00000236107 | AC010127.3
Description
NA
Coordinates
chr2:166015613-166077152:+
Coord C1 exon
chr2:166015613-166015729
Coord A exon
chr2:166027117-166027229
Coord C2 exon
chr2:166077088-166077152
Length
113 bp
Sequences
Splice sites
3' ss Seq
CATCCATGTATTTTTGGCAGGCT
3' ss Score
6.72
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
TGAAACAAGCTTCTGGTTCAAGAGTTTCTTCAGGTTCCACTACGGGCTGTTCTTCTACAGGTGCGCCGATGTCCACAGTGCTACCTTCTGATGAGCTACTGCTTTCATTCAGTTTCT
Seq A exon
GCTGACTTAATATGTGAGCTGACAGAATGCAGAGACCACGTTGTATATGAAGCATCCACTTTGCCTTGTACACCAGGGCATTCAATAACCACTTAATAACTACAACCCTGATG
Seq C2 exon
GAGTGATGGTGAGGAGGAATTGTGCCAGCTTGCTTCTTCACTGCCATTTTGGAACCAGAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000236107_MULTIEX1-1/4=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAAGCTTCTGGTTCAAGAGT
R:
TGAGTTCTGGTTCCAAAATGGCA
Band lengths:
178-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains