HsaEX1001855 @ hg38
Exon Skipping
Gene
ENSG00000236107 | AC010127.3
Description
NA
Coordinates
chr2:166027117-166077152:+
Coord C1 exon
chr2:166027117-166027229
Coord A exon
chr2:166036066-166036130
Coord C2 exon
chr2:166077088-166077152
Length
65 bp
Sequences
Splice sites
3' ss Seq
ACCTCTTTGCTTTCTTCCAGATC
3' ss Score
12.74
5' ss Seq
TTGGTACAG
5' ss Score
0.92
Exon sequences
Seq C1 exon
GCTGACTTAATATGTGAGCTGACAGAATGCAGAGACCACGTTGTATATGAAGCATCCACTTTGCCTTGTACACCAGGGCATTCAATAACCACTTAATAACTACAACCCTGATG
Seq A exon
ATCCGATTCACTACTAAAGTCTTCCGTGTTTAAATTTTCAAAGTCAGATTCTCCTACAGCAATTG
Seq C2 exon
GAGTGATGGTGAGGAGGAATTGTGCCAGCTTGCTTCTTCACTGCCATTTTGGAACCAGAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000236107_MULTIEX1-2/4=1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGAGCTGACAGAATGCAGA
R:
CTGAGTTCTGGTTCCAAAATGGC
Band lengths:
167-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains