HsaEX1003662 @ hg38
Exon Skipping
Gene
ENSG00000151150 | ANK3
Description
ankyrin 3 [Source:HGNC Symbol;Acc:HGNC:494]
Coordinates
chr10:60279538-60615224:-
Coord C1 exon
chr10:60615186-60615224
Coord A exon
chr10:60508474-60508625
Coord C2 exon
chr10:60279538-60279639
Length
152 bp
Sequences
Splice sites
3' ss Seq
CTCTGCTTTTCCTTTTGTAGGTA
3' ss Score
12.46
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GGTGGCTTTGGATCAGATTATTCACGAAGCTCTAGAAAG
Seq A exon
GTAAGTGAACTTGGCATTGGCCATTGCTTATTATGCTTCCTGTCTGGCTCTTACTCATGTTGCCATTTTGTGGACTAAAACTCAAGGCAGTTCAAAAATACTGATATGCAGGTGCCATGGATGCTGTTGGAGTGTGTGTCCTAAGAGAGAGG
Seq C2 exon
TCTGATGCCAATGCAAGTTACTTAAGAGCAGCTCGAGCTGGACACCTTGAAAAGGCCCTCGACTACATAAAAAATGGAGTTGACATCAACATTTGCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151150_MULTIEX1-2/4=1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.615 A=0.000 C2=0.235
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127962=Ank_2=PU(28.3=76.5)
Main Inclusion Isoform:
ENST00000373827fB9306
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTTTGGATCAGATTATTCACG
R:
ATGTAGTCGAGGGCCTTTTCA
Band lengths:
106-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains