HsaEX1003663 @ hg38
Exon Skipping
Gene
ENSG00000151150 | ANK3
Description
ankyrin 3 [Source:HGNC Symbol;Acc:HGNC:494]
Coordinates
chr10:60279538-60508625:-
Coord C1 exon
chr10:60508474-60508625
Coord A exon
chr10:60466168-60466313
Coord C2 exon
chr10:60279538-60279639
Length
146 bp
Sequences
Splice sites
3' ss Seq
CTTTTCCTTGTCATTATTAGAAA
3' ss Score
7.47
5' ss Seq
CCAGTTCAG
5' ss Score
-14.74
Exon sequences
Seq C1 exon
GTAAGTGAACTTGGCATTGGCCATTGCTTATTATGCTTCCTGTCTGGCTCTTACTCATGTTGCCATTTTGTGGACTAAAACTCAAGGCAGTTCAAAAATACTGATATGCAGGTGCCATGGATGCTGTTGGAGTGTGTGTCCTAAGAGAGAGG
Seq A exon
AAACACCTCTTATCCTGATCCAAAATCTTGAGCCACAGGACTCTAACTGAAGAGAAAGAAAATGAATCTACTGCCTCCTCCGAAGCTAGTCCTTCAGATACTAGAAGACAATTATGCCCTCTTTATCAAAGGCCCTACTTAAACCA
Seq C2 exon
TCTGATGCCAATGCAAGTTACTTAAGAGCAGCTCGAGCTGGACACCTTGAAAAGGCCCTCGACTACATAAAAAATGGAGTTGACATCAACATTTGCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151150_MULTIEX1-3/4=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=1.000 C2=0.235
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127962=Ank_2=PU(28.3=76.5)
Main Inclusion Isoform:
ENST00000373827fB9307
Main Skipping Isoform:
ENST00000280772fB9309
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAGTGAACTTGGCATTGGC
R:
TGTAGTCGAGGGCCTTTTCAA
Band lengths:
219-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains