HsaEX1006461 @ hg38
Exon Skipping
Gene
ENSG00000106804 | C5
Description
complement C5 [Source:HGNC Symbol;Acc:HGNC:1331]
Coordinates
chr9:121025454-121027274:-
Coord C1 exon
chr9:121027160-121027274
Coord A exon
chr9:121025661-121025903
Coord C2 exon
chr9:121025454-121025580
Length
243 bp
Sequences
Splice sites
3' ss Seq
AAAAACCAACAAACTCTCAGTTA
3' ss Score
-0.24
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
ATATTTTTATAATAAAGTAGTCACTGAGGCTGACGTTTATATCACATTTGGAATAAGAGAAGACTTAAAAGATGATCAAAAAGAAATGATGCAAACAGCAATGCAAAACACAATG
Seq A exon
TTAAGGGCGGAAGTACGCTGAGAGGCCTATAAAGATGAATGATGACGCAGGAATTGGAAGAAGTCGTGTTTGTCAGCTATTACCAAAAAGACCTGTTGGACCATGTGATGTTCAAGACCCTTCTACTTCTATAATTCTATACAAATAATTAGAAAATAACATCCTGGGCTTAATCGTGGACTCGGTTATCTACTTTACTTTTGACACTAAACCATTCTTCTGACATTTACCTTCAATTTAGAG
Seq C2 exon
TTGATAAATGGAATTGCTCAAGTCACATTTGATTCTGAAACAGCAGTCAAAGAACTGTCATACTACAGTTTAGAAGATTTAAACAACAAGTACCTTTATATTGCTGTAACAGTCATAGAGTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106804_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000223642fB11001
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTAGTCACTGAGGCTGACGT
R:
CTGTAGACTCTATGACTGTTACAGCA
Band lengths:
228-471
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains