HsaINT0024244 @ hg38
Intron Retention
Gene
ENSG00000106804 | C5
Description
complement C5 [Source:HGNC Symbol;Acc:HGNC:1331]
Coordinates
chr9:121025454-121027274:-
Coord C1 exon
chr9:121027160-121027274
Coord A exon
chr9:121025581-121027159
Coord C2 exon
chr9:121025454-121025580
Length
1579 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
CTTTTTCTCCTTTTAAAAAGTTG
3' ss Score
5.69
Exon sequences
Seq C1 exon
ATATTTTTATAATAAAGTAGTCACTGAGGCTGACGTTTATATCACATTTGGAATAAGAGAAGACTTAAAAGATGATCAAAAAGAAATGATGCAAACAGCAATGCAAAACACAATG
Seq A exon
GTAAGATGTTAAGACACAGTCACTCACACCTACAGATGCATCCAGAGGTGAGAGATGAGAAGTTACTTAAAAACCATCTAGTCCAATCCCCCATTTTAGATAGGTTGAAACTTAAAATCCTCCATTGGCTTCCCTTTGCCTTTAGGGTAAAGTTCATTTTCCTTGGCATCAGCCTCCCTTACCAGCTGATCTCATGCCCTTTCCTCCCTCCCTCCCCTTTGTATTAATCACTCCAATTTCTCTAACTGACCAAAGTCTCTCTTGCCTCCAGGTCTTTACAATATCATTTATTCTGCTTGAAAATGCTCTTTCCCATTGTCACCTCCTGCCCCTTCTTTGCCTGGCTAATTCCTTCTCATTCTTTAAGTTTCAACATTGACAGCCTTTCTCTGGGAAGCCTCCCCTGACTCTTCTACACTAGGTTAGCTGCCCCGGCTGTATAGCCTCTTTTCTTAACACATTCTTCACATTTCATTGCAGCGGTTCTCAACTAGGGGTGATTTTTTATTCCCAAGGAGACATTTGGCAATGTCCAGAGACATTTGTGGTTGCTACTGGTGTTTACTAGGGAGAGGCCGGGGATGCTGCTAAATTCCTACCATGCACAGGGCAGGCCCCTACAACAAAGAATTATCCTGTTCAAAATGTCAATAATGCTGAGGGGTTGAGAAACCCTTCTTTACTGGAATGGCTTGTTTACTTATCTATCATTTTCAATATTAAACTATTTGTGAGTCTGAATCATTTCCCTTATATGCCCAGAGACAGCATAGTTTCTTGCAAGGAAATATTCATGAAGTTATTTGTCCATAGTTTAGGGCTAATGATTGCTGGAACTGAGATTAGGGCGCTGGTTCCCTTTCCCTTATTCAGCATTCTTTACATTATACCACAGATGATATGAGTTCATGTCATTTTTGCTCACTTTTTCGTATTCATTTGGTTTGCATCATCAATCATTTATCCTCTACAATCTTATTAATTCAAGATGTAAATTAAATGCATTTTTAAAATGCAAAATTCTATGCTAGACACTGGGATGTAAAGCTAAATAAGACAAAAATGCCTGCCCTCAAGTCGCTCAATTTTATAAGAAAAAATAAGGCAAAGTTTATTTTACTGTTGTGTTAATAATTAAATAATATAATATGACTTAACCCCACATCCCTTTACTCATTGTGTGTTTTAAAATTAGTATTTAAATTTGTAAGCAGTGAAGTACAAATTAAATATTATAAAAACCAACAAACTCTCAGTTAAGGGCGGAAGTACGCTGAGAGGCCTATAAAGATGAATGATGACGCAGGAATTGGAAGAAGTCGTGTTTGTCAGCTATTACCAAAAAGACCTGTTGGACCATGTGATGTTCAAGACCCTTCTACTTCTATAATTCTATACAAATAATTAGAAAATAACATCCTGGGCTTAATCGTGGACTCGGTTATCTACTTTACTTTTGACACTAAACCATTCTTCTGACATTTACCTTCAATTTAGAGGTTAGTAAAAGCAGATTTTATTAATTTTTCCTTATAAGTTCTTCTCCGAAATAACTCCTCCTTTTTCTCCTTTTAAAAAG
Seq C2 exon
TTGATAAATGGAATTGCTCAAGTCACATTTGATTCTGAAACAGCAGTCAAAGAACTGTCATACTACAGTTTAGAAGATTTAAACAACAAGTACCTTTATATTGCTGTAACAGTCATAGAGTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106804:ENST00000223642:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAGTAGTCACTGAGGCTGACG
R:
CTGTAGACTCTATGACTGTTACAGCA
Band lengths:
230-1809
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development