MmuINT0076169 @ mm9
Intron Retention
Gene
ENSMUSG00000026874 | Hc
Description
hemolytic complement [Source:MGI Symbol;Acc:MGI:96031]
Coordinates
chr2:34893121-34894845:-
Coord C1 exon
chr2:34894731-34894845
Coord A exon
chr2:34893248-34894730
Coord C2 exon
chr2:34893121-34893247
Length
1483 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CGTTTGCTCTTTTCAAAAAGTTG
3' ss Score
4.31
Exon sequences
Seq C1 exon
ATATTTTTATAATAAAGTGGTACCTGATGCTGAAGTGTATGCCTTTTTTGGATTGAGAGAGGACATAAAAGATGAGGAGAAGCAGATGATGCACAAAGCCACACAAGCCGCAAAG
Seq A exon
GTAAGATGTTTGCTCAGACCTTGGTTACGTGATGAGCAAGAGTTACTCGCAAACCCTCCAGTGCAATCCCACATCCTGTGGACAGTGCGGCTTAAAGTTTCTGGTTGGCATCTATTGCCCTTCAGATAAATTCCCCCTCCCAAACCCTGAAGCAAGCTAGCTACAGAAATGGGGCACACCAGTGGTCTCTGGGCTTGATGAAGAGACCCTGCCTCAATAAGTAAGGTGGCAGAAACATCCAGCATGATCCTCGATGTCAGCCCTGGGCCTTACCATGCACAAACCCATGCCTGTGTGTTCACACACATGTAAAAAAAATGCGTACATACATGTGCATACAACAAACACAGCATACACACATGCATGCAAAATGAAAACAGAAAATAAAGTGCCCTTTCTTTGGCACCAGCCTCCCTTGCCAGTTAATATTGCGCCATCTCTTCCCTTCCTTGGCTCCAGGTCTGTGCTCCTCCCTCCATCCTTCCTGTCTCCTCTGTGTCTAATTCCTTCTTATTTCTTATGTTCCAATGCTGGAAGCTTTTCTTTGGGAAGTAGTCCCTGACCACCTGAACATGGTTAGCTGGCATTCTATGTGCTCCTAGGCTGTGAGTCTCTCGTATTAAAGCACGTTTTCTGCTTCCTGGTAGAGTGGCTCTCAATTGGGGTGGAGGGCATTTACCCCACTGGGACGTTCAACAATGCCCAGAATTACTTATGATTGTTCTAAAATGAGAGTGCTTCGGGCACTGAGCAGCTAGAGGGAGGGATCTCTCTTCAGTGCAGAGTATCCCACACAACATGGAACCTGTCCACGGTTAAGGGCTGATTTAATTCTGTTACTAGAACTGAGATTAAAGCCCTGGTTCTGTCTTCTCTTACTTAATGTTCTTTAAACACCACTGATGACACAGGGTCGTGTCTTTTTGTGCACATTTTGTACAATCAAGTACTTAGCTTCTGTTTTTTAAAAGATGGTATTATTAATTCAATATGCAAATTAAGAGGCTTTTTAAAATTCAAGGTTCTACTTTAAGCGCTGAGATTTAAAGGAAATAAAGACAAGGACTGTAGCTCAATGATGAAGTGCATGCTTAGCTCGACGTCCCGGCTCAATGCCAGCATCTGTCAATCAAGCTAAATCAGATAAAAAGGCCTGCCTTCGGGTCAAACCATTTTCAAATGAATTAGAAACAGAAGAACATAGTATCTTTTAATAATTCAACAATATAACTAGTAATTAGTGATATAAACAAACTTCATGTCTCTTTACTTACTGTATACTACATTATCAACTTGTACCCGAAAGACCTCGCAATGACCAAAACCTCCCCACACCTGCTACTCTGCCATTCACTTTACTTGTGACAATAACACATGGCTCCTATAGTTTGCCTTCAGTCTAGAGGCTAGTAAGAGCAGACTGATCGTTTTCCTGATATGGTCTTCTCTAACTTGACTCCTTCCGTTTGCTCTTTTCAAAAAG
Seq C2 exon
TTGGTTGACGGAGTTGCTCAGATCTCTTTTGATTCTGAAACAGCAGTTAAAGAGCTGTCCTACAACAGTCTAGAAGACTTAAACAACAAGTACCTTTATATTGCAGTAACAGTCACAGAATCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026874-Hc:NM_010406:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAGTGGTACCTGATGCTGAAGTG
R:
CTGAAGATTCTGTGACTGTTACTGC
Band lengths:
230-1713
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: