GgaINT0126361 @ galGal3
Intron Retention
Gene
ENSGALG00000001565 | C5
Description
NA
Coordinates
chr17:9040396-9041295:-
Coord C1 exon
chr17:9041190-9041295
Coord A exon
chr17:9040523-9041189
Coord C2 exon
chr17:9040396-9040522
Length
667 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
AATTTTTATTTAATTTCCAGCTT
3' ss Score
6.62
Exon sequences
Seq C1 exon
CTATTTTTATAACAAAAGGCTTGCAAAGGCTGATGTTTTTCTGCGTTTTGGAATAATTAAAGGAACTGAAAAAAGAATGATGCCTCGTGCAATGCTTGTAGCTAAG
Seq A exon
GTAAGAAAAAGCAAGCTTAAATTGCGTAGACTTCACCTGCTTCATTCAGGACTGATCCAATTCTACTGAGGCTGGGGAGAACGTGTCCCAAATCCTACTTTGCGCTGACAGCTATTCAGTGTCAAATTTTCCTTTGTAATCCTTCATCAGCCACATAGAAACATACTTTGCAGTGGAAGTCAGAAGCAGCATCTCAAACAGAATGTAACTTCAGTCTGGTTCATTTGTTCACTTGAGTAAATCTTGTGGTTGAAATTTCTATCAAGTAAATTTTTTGCTGTCTATTACAGAACAAAAGAAATCAAACATAGGATCAATGTAGTAATAGCAAATCACAATCAGAGACTGTTTCTCCTTTTCTCATTTAGTCTGGTCTTTTTGATTTAGTCATTGAAGAATTGTAAATGACGTTATCTTTTCTAAATGAGGAGAGATATATCTGTGTTTGGACTGCAGGCAGATTTTGGAACATGTGCTATTGATTCATTAATCATTCATAATTCTAAGGAAGAAAGAATTCTTATTTGTTGAATTAAAAAATGTCCACCTTTGATTTTCTCTGAAAATAGTGAGTAAAAGATGCTGAAAATAGAATTTACATATAATTTATCTATCTATTATTTCTAAGTTATTTGCTGTAAATGAATAATTTTTATTTAATTTCCAG
Seq C2 exon
CTTACAAATGGAGTTGCTGAGATCAATTTTAACAGTAAGAAAGCAGTGAGTTCTTTAGGGTTTCAAAGCCTAGAAGAATTGGATGGGTCTTATTTATACATTGCAGCATCAGTAGTGGAGTCTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001565:ENSGALT00000002379:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTATAACAAAAGGCTTGCAAAGG
R:
CCATAGACTCCACTACTGATGCTG
Band lengths:
230-897
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]