HsaEX1006957 @ hg38
Exon Skipping
Gene
ENSG00000135773 | CAPN9
Description
calpain 9 [Source:HGNC Symbol;Acc:HGNC:1486]
Coordinates
chr1:230785981-230787602:+
Coord C1 exon
chr1:230785981-230786017
Coord A exon
chr1:230786110-230786227
Coord C2 exon
chr1:230787522-230787602
Length
118 bp
Sequences
Splice sites
3' ss Seq
CATCATGTAAAACTCTGCAGTTC
3' ss Score
3.54
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GGATATGGATGGAAATGTAGACATTGACCTTCCTGAG
Seq A exon
TTCAGGGATGGTTACATGCAATCAAGTAAGCATCTATGATTCTAACCTCCTGGAGACCAAGATGTGTGTGTTCTAGTCTGTGCTCTTCTAGTCCACAAGGACCTGGCATGGGAGTGAG
Seq C2 exon
CCTCCAAAGCCAACTCCACCTGACCAGGAGACAGAGGAGGAGCAGCGGTTTCGGGCTCTGTTTGAACAAGTCGCTGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135773-'20-16,'20-15,21-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.577 A=0.000 C2=0.630
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
NO
C2:
PF138331=EF-hand_8=PU(0.1=0.0)
Main Inclusion Isoform:
ENST00000271971fB11307
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGATGGAAATGTAGACATTGACCT
R:
CTCACCAGCGACTTGTTCAAAC
Band lengths:
114-232
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains