Special

ENSG00000135773 @ hg38

Biotype
protein_coding
Gene Symbol
CAPN9
Description
calpain 9 [Source:HGNC Symbol;Acc:HGNC:1486]
Coordinates
chr1:230747384-230802003:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
9.39
75.14
0
Alternative 3'ss
9
chr1:230762653-230762661
+
90.61
75.14
0
Exon Skipping
70
chr1:230755337-230755406
+
84.47
34.98
0
Exon Skipping
119
chr1:230759512-230759630
+
88.98
24.67
0
Exon Skipping
84
chr1:230769180-230769263
+
96.32
14.23
0
Exon Skipping
78
chr1:230774554-230774631
+
81.59
39.9
0
Exon Skipping
118
chr1:230786110-230786227
+
5.18
11.11
0
Exon Skipping
58
chr1:230790132-230790189
+
94.75
12.69
0
Intron Retention
5272
chr1:230780709-230785980
+
18.36
100
0
Intron Retention
1504
chr1:230786018-230787521
+
26.22
96.89
0
Intron Retention
2529
chr1:230787603-230790131
+
21.99
100
0
Intron Retention
1674
chr1:230790190-230791863
+
39.2
91.99
0
Intron Retention
497
chr1:230791929-230792425
+
16.74
100
0
Intron Retention
355
chr1:230792495-230792849
+
24.28
95.89
0
Intron Retention
2882
chr1:230795280-230798161
+
17.49
98.76
0
Intron Retention
2750
chr1:230769264-230772013
+
18.64
100
0
Intron Retention
163
chr1:230780337-230780499
+
14.96
100
0
Intron Retention
3349
chr1:230798221-230801569
+
15.4
75.08
0
Intron Retention
2454
chr1:230772100-230774553
+
18.15
42.83
0
Intron Retention
4341
chr1:230774632-230778972
+
37.79
97.44
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000031981 Capn9 1-to-1
Mouse mm9 ENSMUSG00000031981 Capn9 1-to-1
Rat rn6 ENSRNOG00000018480 Capn9 1-to-1
Chicken galGal4 ENSGALG00000011136 CAPN9 1-to-1
Chicken galGal3 ENSGALG00000011136 CAPN9 1-to-1
Zebrafish danRer10 ENSDARG00000012341 capn9 1-to-1
Fruitfly dm6 FBgn0012051 CalpA 2-to-2
Fruitfly dm6 FBgn0025866 CalpB 2-to-2