Special

ENSMUSG00000031981 @ mm10

Biotype
protein_coding
Gene Symbol
Capn9
Description
calpain 9 [Source:MGI Symbol;Acc:MGI:1920897]
Coordinates
chr8:124576111-124618731:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
92.35
21.92
0
Alternative 3'ss
84
chr8:124614464-124614547
+
7.65
21.92
0
Alternative 5'ss
0
NA
+
16.24
30.51
0
Alternative 5'ss
137
chr8:124576221-124576357
+
83.76
30.51
0
Alternative 5'ss
0
NA
+
89.18
96.55
0
Alternative 5'ss
354
chr8:124613890-124614243
+
10.82
96.55
0
Exon Skipping
169
chr8:124597499-124597667
+
94.47
19.44
0
Exon Skipping
84
chr8:124598710-124598793
+
94.78
24.49
0
Exon Skipping
86
chr8:124600402-124600487
+
96.99
10.34
0
Intron Retention
2329
chr8:124609174-124611502
+
8.21
21.43
0
Intron Retention
1856
chr8:124611561-124613416
+
12.36
19.88
0
Intron Retention
658
chr8:124613890-124614547
+
8.9
17.77
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000135773 CAPN9 1-to-1
Human hg19 ENSG00000135773 CAPN9 1-to-1
Rat rn6 ENSRNOG00000018480 Capn9 1-to-1
Chicken galGal4 ENSGALG00000011136 CAPN9 1-to-1
Chicken galGal3 ENSGALG00000011136 CAPN9 1-to-1
Zebrafish danRer10 ENSDARG00000012341 capn9 1-to-1
Fruitfly dm6 FBgn0012051 CalpA 2-to-2
Fruitfly dm6 FBgn0025866 CalpB 2-to-2