MmuALTD1019477-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000031981 | Capn9
Description
calpain 9 [Source:MGI Symbol;Acc:MGI:1920897]
Coordinates
chr8:124613826-124614626:+
Coord C1 exon
chr8:124613826-124613889
Coord A exon
NA
Coord C2 exon
chr8:124614464-124614626
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
GTCCAACCTTGTCTGTCTAGAAG
3' ss Score
5.26
Exon sequences
Seq C1 exon
TGGCAACGGGAAGCTGGAGTTTGAAGAGTTCCGGGTCTTCTGGGACAAGCTGAAACACTGGATG
Seq A exon
NA
Seq C2 exon
AAGGCAGCTGTCACCCCTGGGCAGCTGCCAGCTGCCACTGGTCCCTGGGCTCTGACTTCTCCATGCTCTACTCCCTGGTCCCAGGACCTGTTTCTCCAGTTCGATGTGGACAAGTCTGGCACCATGTCTTCCTATGAGCTGCGGACGGCACTGAAAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031981-20-21,21-21-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PD(29.5=78.3),PF134051=EF-hand_6=PU(5.7=8.7)
A:
NA
C2:
PF134051=EF-hand_6=FE(74.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACGGGAAGCTGGAGTTTGA
R:
CTGCAGCTTTCAGTGCCGTC
Band lengths:
224-578
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types