MmuALTA0003185-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000031981 | Capn9
Description
calpain 9 [Source:MGI Symbol;Acc:MGI:1920897]
Coordinates
chr8:124613821-124614626:+
Coord C1 exon
chr8:124613821-124613889
Coord A exon
chr8:124614464-124614547
Coord C2 exon
chr8:124614548-124614626
Length
84 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
GTCCAACCTTGTCTGTCTAGAAG
3' ss Score
5.26
Exon sequences
Seq C1 exon
ACCAGTGGCAACGGGAAGCTGGAGTTTGAAGAGTTCCGGGTCTTCTGGGACAAGCTGAAACACTGGATG
Seq A exon
AAGGCAGCTGTCACCCCTGGGCAGCTGCCAGCTGCCACTGGTCCCTGGGCTCTGACTTCTCCATGCTCTACTCCCTGGTCCCAG
Seq C2 exon
GACCTGTTTCTCCAGTTCGATGTGGACAAGTCTGGCACCATGTCTTCCTATGAGCTGCGGACGGCACTGAAAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031981-20-22,20-21-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PD(29.5=78.3),PF134051=EF-hand_6=PU(5.7=8.7)
A:
NA
C2:
PF134051=EF-hand_6=FE(74.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGGCAACGGGAAGCTG
R:
CTGCAGCTTTCAGTGCCGTC
Band lengths:
146-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types