Special

ENSG00000135773 @ hg19

Biotype
protein_coding
Gene Symbol
CAPN9
Description
calpain 9 [Source:HGNC Symbol;Acc:1486]
Coordinates
chr1:230883130-230937749:+
Assembly
hg19
Other assemblies
hg38

GENOMIC BROWSER[edit]

EXPRESSION VALUES[edit]

SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Exon Skipping
70
chr1:230891083-230891152
+
84.53
34.98
0
Exon Skipping
119
chr1:230895258-230895376
+
88.95
25.27
0
Exon Skipping
84
chr1:230904926-230905009
+
96.34
14.04
0
Exon Skipping
78
chr1:230910300-230910377
+
81.51
39.18
0
Exon Skipping
133
chr1:230911001-230911133
+
14.27
17.22
0
Exon Skipping
58
chr1:230925878-230925935
+
94.82
12.67
0
Intron Retention
5272
chr1:230916455-230921726
+
20.23
100
0
Intron Retention
1504
chr1:230921764-230923267
+
26.22
96.89
0
Intron Retention
2529
chr1:230923349-230925877
+
21.99
100
0
Intron Retention
1674
chr1:230925936-230927609
+
39.26
91.99
0
Intron Retention
497
chr1:230927675-230928171
+
16.73
100
0
Intron Retention
355
chr1:230928241-230928595
+
23.04
95.89
0
Intron Retention
2882
chr1:230931026-230933907
+
16.46
98.77
0
Intron Retention
2750
chr1:230905010-230907759
+
18.39
100
0
Intron Retention
1045
chr1:230914880-230915924
+
5
23.08
0
Intron Retention
163
chr1:230916083-230916245
+
14.96
100
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000031981 Capn9 1-to-1
Mouse mm9 ENSMUSG00000031981 Capn9 1-to-1
Rat rn6 ENSRNOG00000018480 Capn9 1-to-1
Chicken galGal4 ENSGALG00000011136 CAPN9 1-to-1
Chicken galGal3 ENSGALG00000011136 CAPN9 1-to-1
Zebrafish danRer10 ENSDARG00000012341 capn9 1-to-1
Fruitfly dm6 FBgn0012051 CalpA 2-to-2
Fruitfly dm6 FBgn0025866 CalpB 2-to-2
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