MmuEX0009088 @ mm10
Exon Skipping
Gene
ENSMUSG00000031981 | Capn9
Description
calpain 9 [Source:MGI Symbol;Acc:MGI:1920897]
Coordinates
chr8:124594629-124603963:+
Coord C1 exon
chr8:124594629-124594762
Coord A exon
chr8:124598710-124598793
Coord C2 exon
chr8:124603886-124603963
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTGGTCTTCCTTTGCTCTAGACC
3' ss Score
9.45
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
TTCTGGCAGCACAGTGAGTGGCTGGACGTAGTGATTGATGACCGCCTGCCCACCTTCAAGGACCGCCTGGTCTTCCTCCACTCTGCTGATCACAATGAGTTCTGGAGCGCACTGCTGGAGAAAGCCTATGCCAA
Seq A exon
ACCCTGAATGCCTCAGAATCTGAAGCTCGAACATCTCTTGGTCTCATTAAGGGCCATGCCTACACCGTGACGGGGCTCGATCAG
Seq C2 exon
CTCTCCTGAGTGGCGCTCTGTGGACCTGGAGGAGCAGAAGCGCCTGGGCCACACTGCCCTTGATGACGGGGAGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031981_MULTIEX1-2/4=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.074
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(14.9=100)
A:
PF0064816=Peptidase_C2=FE(9.1=100)
C2:
PF0064816=Peptidase_C2=FE(8.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTGATTGATGACCGCCTGC
R:
CGTCATCAAGGGCAGTGTGG
Band lengths:
174-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types